Hb_006449_050

Information

Type transcription factor
Description TF Family: SET
Location Contig6449: 68356-93938
Sequence    

Annotation

kegg
ID rcu:RCOM_0617250
description phd finger protein, putative (EC:2.1.1.43)
nr
ID XP_012066265.1
description PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
swissprot
ID P0CB22
description Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1
trembl
ID A0A067LFK8
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_23831 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase atx2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52248: 74146-85547 , PASA_asmbl_52249: 85688-91176 , PASA_asmbl_52250: 92078-93700 , PASA_asmbl_52251: 92078-93700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006449_050 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
2 Hb_010381_060 0.067634408 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
3 Hb_002221_050 0.0677389767 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
4 Hb_000035_040 0.0683410302 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
5 Hb_001599_030 0.0688454808 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
6 Hb_001235_200 0.0689039217 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000714_050 0.0704815859 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
8 Hb_002255_050 0.0714356682 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000320_200 0.0740025991 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
10 Hb_000329_130 0.0776871173 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_008143_030 0.077887905 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
12 Hb_000574_440 0.0780091428 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
13 Hb_002749_110 0.0783405834 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
14 Hb_000424_010 0.078748623 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
15 Hb_010315_090 0.0794550019 - - suppressor of ty, putative [Ricinus communis]
16 Hb_003544_100 0.0799453127 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
17 Hb_004218_240 0.0802657551 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
18 Hb_006915_060 0.0815227696 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
19 Hb_000529_260 0.0817248689 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
20 Hb_000417_160 0.0845529686 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]

Gene co-expression network

sample Hb_006449_050 Hb_006449_050 Hb_010381_060 Hb_010381_060 Hb_006449_050--Hb_010381_060 Hb_002221_050 Hb_002221_050 Hb_006449_050--Hb_002221_050 Hb_000035_040 Hb_000035_040 Hb_006449_050--Hb_000035_040 Hb_001599_030 Hb_001599_030 Hb_006449_050--Hb_001599_030 Hb_001235_200 Hb_001235_200 Hb_006449_050--Hb_001235_200 Hb_000714_050 Hb_000714_050 Hb_006449_050--Hb_000714_050 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_010381_060--Hb_001599_030 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_002221_050--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_002652_040 Hb_002652_040 Hb_000035_040--Hb_002652_040 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000331_190 Hb_000331_190 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_001599_030--Hb_001235_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_001235_200--Hb_000714_050 Hb_001235_200--Hb_000035_040 Hb_001235_200--Hb_010381_060 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9168 5.78936 5.04881 3.70161 13.9113 11.2276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79098 2.62135 6.23786 6.16197 5.88872

CAGE analysis