Hb_000010_180

Information

Type -
Description -
Location Contig10: 222509-225142
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09200g
description POPTRDRAFT_570176; hypothetical protein
nr
ID XP_012079947.1
description PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
swissprot
ID Q04836
description 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1
trembl
ID A0A067K455
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11382 PE=4 SV=1
Gene Ontology
ID GO:0019013
description 28 kda chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00149: 222430-225081 , PASA_asmbl_00150: 223437-223926
cDNA
(Sanger)
(ID:Location)		 006_B02.ab1: 222450-223298 , 011_O01.ab1: 222519-223273 , 019_I17.ab1: 222430-223111 , 024_E21.ab1: 222511-223250 , 037_O04.ab1: 222509-224313

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_180 0.0 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
2 Hb_003544_100 0.0781459574 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
3 Hb_015884_030 0.0782110718 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
4 Hb_006915_060 0.0795254411 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
5 Hb_006449_050 0.0886333934 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
6 Hb_000768_190 0.0892647739 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
7 Hb_002909_050 0.090388389 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000714_050 0.0912205116 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
9 Hb_002749_110 0.0916708152 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
10 Hb_000170_190 0.0931672928 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
11 Hb_001599_030 0.0934815263 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
12 Hb_008595_010 0.0951063021 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
13 Hb_012098_110 0.0951785802 - - Ribonuclease 3 [Gossypium arboreum]
14 Hb_004218_240 0.0997380944 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
15 Hb_000849_020 0.1011870443 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
16 Hb_012286_010 0.1015229043 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
17 Hb_010381_060 0.1016663745 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
18 Hb_009411_010 0.1035692497 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
19 Hb_006915_070 0.1045482843 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
20 Hb_003052_150 0.1054457725 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_180 Hb_000010_180 Hb_003544_100 Hb_003544_100 Hb_000010_180--Hb_003544_100 Hb_015884_030 Hb_015884_030 Hb_000010_180--Hb_015884_030 Hb_006915_060 Hb_006915_060 Hb_000010_180--Hb_006915_060 Hb_006449_050 Hb_006449_050 Hb_000010_180--Hb_006449_050 Hb_000768_190 Hb_000768_190 Hb_000010_180--Hb_000768_190 Hb_002909_050 Hb_002909_050 Hb_000010_180--Hb_002909_050 Hb_009411_010 Hb_009411_010 Hb_003544_100--Hb_009411_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_000034_040 Hb_000034_040 Hb_015884_030--Hb_000034_040 Hb_015884_030--Hb_003938_080 Hb_015884_030--Hb_003544_100 Hb_015884_030--Hb_009411_010 Hb_015884_030--Hb_006915_060 Hb_006915_060--Hb_009411_010 Hb_004218_240 Hb_004218_240 Hb_006915_060--Hb_004218_240 Hb_003847_120 Hb_003847_120 Hb_006915_060--Hb_003847_120 Hb_006915_060--Hb_001599_030 Hb_010381_060 Hb_010381_060 Hb_006449_050--Hb_010381_060 Hb_002221_050 Hb_002221_050 Hb_006449_050--Hb_002221_050 Hb_000035_040 Hb_000035_040 Hb_006449_050--Hb_000035_040 Hb_006449_050--Hb_001599_030 Hb_001235_200 Hb_001235_200 Hb_006449_050--Hb_001235_200 Hb_000714_050 Hb_000714_050 Hb_006449_050--Hb_000714_050 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_000037_110 Hb_000037_110 Hb_000768_190--Hb_000037_110 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_000768_190--Hb_006915_060 Hb_000076_130 Hb_000076_130 Hb_002909_050--Hb_000076_130 Hb_010710_080 Hb_010710_080 Hb_002909_050--Hb_010710_080 Hb_000665_160 Hb_000665_160 Hb_002909_050--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_002909_050--Hb_000544_010 Hb_002909_050--Hb_001599_030 Hb_006915_070 Hb_006915_070 Hb_002909_050--Hb_006915_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.023 69.9629 81.5449 34.5236 180.663 193.078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.5867 42.2672 80.892 72.7913 124.351

CAGE analysis