Hb_007943_100

Information

Type -
Description -
Location Contig7943: 92048-92745
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDP03309.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068U563
description Coffea canephora DH200=94 genomic scaffold, scaffold_9 OS=Coffea canephora GN=GSCOC_T00041849001 PE=4 SV=1
Gene Ontology
ID GO:0008270
description basic salivary proline-rich protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58470: 92149-97312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_100 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000768_190 0.0820977683 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
3 Hb_028639_010 0.0944226673 - - transporter, putative [Ricinus communis]
4 Hb_003001_150 0.0977826365 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000037_110 0.0979574803 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
6 Hb_002150_030 0.0984328715 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
7 Hb_000059_150 0.0985633751 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
8 Hb_000072_350 0.0985642954 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
9 Hb_007304_110 0.0999574622 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
10 Hb_000933_090 0.1009183353 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
11 Hb_000977_180 0.1009370166 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
12 Hb_009535_020 0.102279397 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
13 Hb_008595_010 0.1034927905 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
14 Hb_000261_350 0.1041502173 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
15 Hb_011316_110 0.1065412484 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
16 Hb_001584_290 0.1079286609 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_001369_420 0.1083035633 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
18 Hb_000048_140 0.1089579493 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
19 Hb_001300_070 0.1094614012 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_000173_510 0.1097875478 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]

Gene co-expression network

sample Hb_007943_100 Hb_007943_100 Hb_000768_190 Hb_000768_190 Hb_007943_100--Hb_000768_190 Hb_028639_010 Hb_028639_010 Hb_007943_100--Hb_028639_010 Hb_003001_150 Hb_003001_150 Hb_007943_100--Hb_003001_150 Hb_000037_110 Hb_000037_110 Hb_007943_100--Hb_000037_110 Hb_002150_030 Hb_002150_030 Hb_007943_100--Hb_002150_030 Hb_000059_150 Hb_000059_150 Hb_007943_100--Hb_000059_150 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_000768_190--Hb_000037_110 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_000048_140 Hb_000048_140 Hb_028639_010--Hb_000048_140 Hb_009535_020 Hb_009535_020 Hb_028639_010--Hb_009535_020 Hb_002200_130 Hb_002200_130 Hb_028639_010--Hb_002200_130 Hb_003090_080 Hb_003090_080 Hb_028639_010--Hb_003090_080 Hb_000600_070 Hb_000600_070 Hb_028639_010--Hb_000600_070 Hb_000173_510 Hb_000173_510 Hb_028639_010--Hb_000173_510 Hb_003001_150--Hb_003544_100 Hb_002276_060 Hb_002276_060 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_000021_040 Hb_000021_040 Hb_000037_110--Hb_000021_040 Hb_000037_110--Hb_008595_010 Hb_022250_110 Hb_022250_110 Hb_000037_110--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070 Hb_007108_030 Hb_007108_030 Hb_002150_030--Hb_007108_030 Hb_007586_030 Hb_007586_030 Hb_002150_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_002150_030--Hb_000977_180 Hb_001797_050 Hb_001797_050 Hb_002150_030--Hb_001797_050 Hb_006649_060 Hb_006649_060 Hb_002150_030--Hb_006649_060 Hb_009411_010 Hb_009411_010 Hb_002150_030--Hb_009411_010 Hb_000059_150--Hb_000173_510 Hb_000743_040 Hb_000743_040 Hb_000059_150--Hb_000743_040 Hb_002273_130 Hb_002273_130 Hb_000059_150--Hb_002273_130 Hb_000059_150--Hb_000600_070 Hb_010381_060 Hb_010381_060 Hb_000059_150--Hb_010381_060 Hb_004450_010 Hb_004450_010 Hb_000059_150--Hb_004450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.44125 3.8757 2.11207 4.76804 15.3645 11.5225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57112 4.34767 6.73821 3.97516 5.77449

CAGE analysis