Hb_022250_110

Information

Type -
Description -
Location Contig22250: 74909-82214
Sequence    

Annotation

kegg
ID rcu:RCOM_1503040
description ebna2 binding protein P100, putative
nr
ID XP_012090546.1
description PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q863B3
description Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1
trembl
ID A0A067JF85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26343 PE=4 SV=1
Gene Ontology
ID GO:0016442
description staphylococcal nuclease domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23035: 74939-82155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_110 0.0 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
2 Hb_000329_490 0.0649807734 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
3 Hb_000209_070 0.0649834921 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
4 Hb_000029_320 0.0715994897 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_078477_040 0.0718409264 - - nuclear movement protein nudc, putative [Ricinus communis]
6 Hb_003018_160 0.0727768496 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
7 Hb_006002_030 0.0745076353 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
8 Hb_002652_040 0.0785457092 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
9 Hb_000213_070 0.079908431 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
10 Hb_000021_040 0.0801613488 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
11 Hb_005462_020 0.0806390778 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
12 Hb_007849_020 0.0836945128 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
13 Hb_000347_130 0.0840985103 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
14 Hb_000035_040 0.0846190132 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
15 Hb_000417_160 0.0883842273 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
16 Hb_004970_160 0.088983256 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
17 Hb_000331_190 0.0896951658 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
18 Hb_031754_010 0.0904579843 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
19 Hb_125092_020 0.0907083645 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
20 Hb_002883_010 0.0909161917 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_022250_110 Hb_022250_110 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_000209_070 Hb_000209_070 Hb_022250_110--Hb_000209_070 Hb_000029_320 Hb_000029_320 Hb_022250_110--Hb_000029_320 Hb_078477_040 Hb_078477_040 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_006002_030 Hb_006002_030 Hb_022250_110--Hb_006002_030 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_000329_490--Hb_000029_320 Hb_006882_010 Hb_006882_010 Hb_000329_490--Hb_006882_010 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580 Hb_002070_070 Hb_002070_070 Hb_000329_490--Hb_002070_070 Hb_001473_090 Hb_001473_090 Hb_000209_070--Hb_001473_090 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000209_070--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_000209_070--Hb_003464_020 Hb_000029_320--Hb_002070_070 Hb_015763_030 Hb_015763_030 Hb_000029_320--Hb_015763_030 Hb_000029_320--Hb_001473_090 Hb_078477_040--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_011497_010 Hb_011497_010 Hb_003018_160--Hb_011497_010 Hb_001575_080 Hb_001575_080 Hb_003018_160--Hb_001575_080 Hb_006816_300 Hb_006816_300 Hb_003018_160--Hb_006816_300 Hb_000116_280 Hb_000116_280 Hb_003018_160--Hb_000116_280 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090 Hb_001975_020 Hb_001975_020 Hb_003018_160--Hb_001975_020 Hb_006002_030--Hb_001278_060 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.225 66.9708 38.7372 56.5478 181.164 172.308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.9701 25.1909 48.2545 68.9341 41.1855

CAGE analysis