Hb_015763_030

Information

Type -
Description -
Location Contig15763: 34887-41405
Sequence    

Annotation

kegg
ID rcu:RCOM_0206230
description hypothetical protein
nr
ID XP_002528011.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZQ34
description Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1
trembl
ID B9SPU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0206230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13775: 34972-41277 , PASA_asmbl_13776: 40071-41130 , PASA_asmbl_13778: 38572-38872 , PASA_asmbl_13781: 36576-36750 , PASA_asmbl_13783: 36072-37795
cDNA
(Sanger)
(ID:Location)		 036_A04.ab1: 39411-41277

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015763_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000029_320 0.0631668006 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_003464_020 0.0736512717 - - srpk, putative [Ricinus communis]
4 Hb_002070_070 0.0748571655 - - ATP binding protein, putative [Ricinus communis]
5 Hb_021409_170 0.0754870044 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
6 Hb_001085_320 0.0758370503 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
7 Hb_010180_040 0.0769819728 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
8 Hb_000209_070 0.0813396332 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
9 Hb_000059_150 0.0833953585 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
10 Hb_000023_190 0.0838686149 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
11 Hb_000424_230 0.0840948128 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
12 Hb_004218_240 0.0850404732 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
13 Hb_006114_020 0.0852028305 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000567_050 0.0853541431 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
15 Hb_002273_130 0.0864590446 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
16 Hb_000329_090 0.0868012 - - arginase, putative [Ricinus communis]
17 Hb_030131_040 0.0872215019 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
18 Hb_001863_110 0.0881091811 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_001541_090 0.0895604507 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_002044_060 0.0916423419 - - elongation factor ts, putative [Ricinus communis]

Gene co-expression network

sample Hb_015763_030 Hb_015763_030 Hb_000029_320 Hb_000029_320 Hb_015763_030--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_015763_030--Hb_003464_020 Hb_002070_070 Hb_002070_070 Hb_015763_030--Hb_002070_070 Hb_021409_170 Hb_021409_170 Hb_015763_030--Hb_021409_170 Hb_001085_320 Hb_001085_320 Hb_015763_030--Hb_001085_320 Hb_010180_040 Hb_010180_040 Hb_015763_030--Hb_010180_040 Hb_000029_320--Hb_002070_070 Hb_000209_070 Hb_000209_070 Hb_000029_320--Hb_000209_070 Hb_022250_110 Hb_022250_110 Hb_000029_320--Hb_022250_110 Hb_001473_090 Hb_001473_090 Hb_000029_320--Hb_001473_090 Hb_000329_490 Hb_000329_490 Hb_000029_320--Hb_000329_490 Hb_000023_190 Hb_000023_190 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_002070_070--Hb_000329_490 Hb_002070_070--Hb_000209_070 Hb_001040_120 Hb_001040_120 Hb_002070_070--Hb_001040_120 Hb_004218_240 Hb_004218_240 Hb_002070_070--Hb_004218_240 Hb_001221_040 Hb_001221_040 Hb_021409_170--Hb_001221_040 Hb_000436_040 Hb_000436_040 Hb_021409_170--Hb_000436_040 Hb_021409_170--Hb_000023_190 Hb_000046_440 Hb_000046_440 Hb_021409_170--Hb_000046_440 Hb_000789_080 Hb_000789_080 Hb_021409_170--Hb_000789_080 Hb_030131_040 Hb_030131_040 Hb_001085_320--Hb_030131_040 Hb_000868_060 Hb_000868_060 Hb_001085_320--Hb_000868_060 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320 Hb_008714_020 Hb_008714_020 Hb_010180_040--Hb_008714_020 Hb_005494_020 Hb_005494_020 Hb_010180_040--Hb_005494_020 Hb_000347_130 Hb_000347_130 Hb_010180_040--Hb_000347_130 Hb_000046_450 Hb_000046_450 Hb_010180_040--Hb_000046_450 Hb_000160_220 Hb_000160_220 Hb_010180_040--Hb_000160_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.1865 46.4774 35.9617 60.836 114.291 141.078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.1513 25.7256 30.6505 44.135 37.7183

CAGE analysis