Hb_001040_120

Information

Type -
Description -
Location Contig1040: 179716-187575
Sequence    

Annotation

kegg
ID rcu:RCOM_0936030
description allantoinase, putative (EC:3.5.2.5)
nr
ID XP_002519047.1
description allantoinase, putative [Ricinus communis]
swissprot
ID Q94AP0
description Allantoinase OS=Arabidopsis thaliana GN=ALN PE=1 SV=1
trembl
ID B9RZ78
description Allantoinase, putative OS=Ricinus communis GN=RCOM_0936030 PE=4 SV=1
Gene Ontology
ID GO:0005783
description allantoinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01473: 179838-187588
cDNA
(Sanger)
(ID:Location)		 012_N11.ab1: 179841-182614

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_120 0.0 - - allantoinase, putative [Ricinus communis]
2 Hb_000029_320 0.0854532898 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_010180_040 0.0889269465 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
4 Hb_002070_070 0.091223689 - - ATP binding protein, putative [Ricinus communis]
5 Hb_002159_040 0.0947729837 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
6 Hb_015763_030 0.0953908786 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011497_010 0.1009278087 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
8 Hb_003018_160 0.1009338434 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
9 Hb_002493_090 0.1020773322 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
10 Hb_000244_240 0.1053666486 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003436_050 0.1061301032 - - arf gtpase-activating protein, putative [Ricinus communis]
12 Hb_006114_020 0.1076294793 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008406_140 0.1084274823 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_002815_060 0.1107640035 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
15 Hb_004143_070 0.1110871789 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000329_490 0.1113449687 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
17 Hb_083043_010 0.1116657755 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_022250_110 0.1138994576 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
19 Hb_004218_070 0.1143159307 - - annexin [Manihot esculenta]
20 Hb_018954_020 0.116756695 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]

Gene co-expression network

sample Hb_001040_120 Hb_001040_120 Hb_000029_320 Hb_000029_320 Hb_001040_120--Hb_000029_320 Hb_010180_040 Hb_010180_040 Hb_001040_120--Hb_010180_040 Hb_002070_070 Hb_002070_070 Hb_001040_120--Hb_002070_070 Hb_002159_040 Hb_002159_040 Hb_001040_120--Hb_002159_040 Hb_015763_030 Hb_015763_030 Hb_001040_120--Hb_015763_030 Hb_011497_010 Hb_011497_010 Hb_001040_120--Hb_011497_010 Hb_000029_320--Hb_002070_070 Hb_000029_320--Hb_015763_030 Hb_000209_070 Hb_000209_070 Hb_000029_320--Hb_000209_070 Hb_022250_110 Hb_022250_110 Hb_000029_320--Hb_022250_110 Hb_001473_090 Hb_001473_090 Hb_000029_320--Hb_001473_090 Hb_000329_490 Hb_000329_490 Hb_000029_320--Hb_000329_490 Hb_008714_020 Hb_008714_020 Hb_010180_040--Hb_008714_020 Hb_005494_020 Hb_005494_020 Hb_010180_040--Hb_005494_020 Hb_010180_040--Hb_015763_030 Hb_000347_130 Hb_000347_130 Hb_010180_040--Hb_000347_130 Hb_000046_450 Hb_000046_450 Hb_010180_040--Hb_000046_450 Hb_000160_220 Hb_000160_220 Hb_010180_040--Hb_000160_220 Hb_002070_070--Hb_015763_030 Hb_002070_070--Hb_000329_490 Hb_002070_070--Hb_000209_070 Hb_004218_240 Hb_004218_240 Hb_002070_070--Hb_004218_240 Hb_000244_240 Hb_000244_240 Hb_002159_040--Hb_000244_240 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_002159_040--Hb_000329_490 Hb_003464_020 Hb_003464_020 Hb_015763_030--Hb_003464_020 Hb_021409_170 Hb_021409_170 Hb_015763_030--Hb_021409_170 Hb_001085_320 Hb_001085_320 Hb_015763_030--Hb_001085_320 Hb_003018_160 Hb_003018_160 Hb_011497_010--Hb_003018_160 Hb_003716_020 Hb_003716_020 Hb_011497_010--Hb_003716_020 Hb_001575_080 Hb_001575_080 Hb_011497_010--Hb_001575_080 Hb_011497_010--Hb_000244_240 Hb_000116_280 Hb_000116_280 Hb_011497_010--Hb_000116_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.7906 21.6361 9.99176 27.1268 43.7345 69.1037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.334 6.76711 11.5494 12.6316 11.5259

CAGE analysis