Hb_003716_020

Information

Type -
Description -
Location Contig3716: 54583-59147
Sequence    

Annotation

kegg
ID rcu:RCOM_0981060
description Vesicle-associated membrane protein, putative
nr
ID XP_012092646.1
description PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
swissprot
ID Q9MAS5
description Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2
trembl
ID A0A067J992
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06407 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 726

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38064: 54625-59044
cDNA
(Sanger)
(ID:Location)		 018_B16.ab1: 54868-59022

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003716_020 0.0 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
2 Hb_011497_010 0.0711508361 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
3 Hb_007668_020 0.0753715108 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
4 Hb_003581_020 0.0755421578 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
5 Hb_005000_270 0.0764636564 - - unnamed protein product [Vitis vinifera]
6 Hb_000849_100 0.077539327 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
7 Hb_006002_030 0.0837020264 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
8 Hb_001582_030 0.0899739832 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
9 Hb_000213_070 0.091887335 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
10 Hb_001278_060 0.0925064668 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_002986_050 0.0929603029 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
12 Hb_003018_160 0.0934963951 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
13 Hb_001498_030 0.0949685236 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
14 Hb_000814_090 0.0964942184 - - conserved hypothetical protein [Ricinus communis]
15 Hb_079326_010 0.0969193226 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
16 Hb_004881_050 0.0973791817 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
17 Hb_173178_020 0.0977294298 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
18 Hb_000613_100 0.0978356577 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
19 Hb_002475_050 0.0982073186 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_000165_130 0.0984510973 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]

Gene co-expression network

sample Hb_003716_020 Hb_003716_020 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_007668_020 Hb_007668_020 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_005000_270 Hb_005000_270 Hb_003716_020--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030 Hb_003018_160 Hb_003018_160 Hb_011497_010--Hb_003018_160 Hb_001575_080 Hb_001575_080 Hb_011497_010--Hb_001575_080 Hb_002159_040 Hb_002159_040 Hb_011497_010--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_011497_010--Hb_000244_240 Hb_000116_280 Hb_000116_280 Hb_011497_010--Hb_000116_280 Hb_001278_060 Hb_001278_060 Hb_007668_020--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_007668_020--Hb_005129_050 Hb_000213_070 Hb_000213_070 Hb_007668_020--Hb_000213_070 Hb_007668_020--Hb_003581_020 Hb_000199_080 Hb_000199_080 Hb_007668_020--Hb_000199_080 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_004881_050 Hb_004881_050 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_000134_360 Hb_000134_360 Hb_005000_270--Hb_000134_360 Hb_005000_270--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_005000_270--Hb_000212_280 Hb_000631_150 Hb_000631_150 Hb_000849_100--Hb_000631_150 Hb_000849_100--Hb_000134_360 Hb_000849_100--Hb_006002_030 Hb_002725_070 Hb_002725_070 Hb_000849_100--Hb_002725_070 Hb_002235_320 Hb_002235_320 Hb_000849_100--Hb_002235_320 Hb_078477_040 Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_006002_030--Hb_001278_060 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_006002_030--Hb_000213_070 Hb_006002_030--Hb_003018_160 Hb_006002_030--Hb_002235_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.448 49.1315 35.2629 39.3531 148.517 188.022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.8554 28.2812 43.5754 40.3639 10.8375

CAGE analysis