Hb_083043_010

Information

Type -
Description -
Location Contig83043: 1110-2413
Sequence    

Annotation

kegg
ID cic:CICLE_v10002668mg
description hypothetical protein
nr
ID XP_012075290.1
description PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
swissprot
ID Q99JH1
description Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1
trembl
ID A0A067KSQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09459 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease p protein subunit p25-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083043_010 0.0 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
2 Hb_003711_040 0.0792379719 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
3 Hb_003581_020 0.0823971603 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
4 Hb_002811_120 0.1005575086 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
5 Hb_004881_050 0.1007284067 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_006114_020 0.1039045552 - - conserved hypothetical protein [Ricinus communis]
7 Hb_150204_010 0.1065747774 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
8 Hb_000424_230 0.107406455 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
9 Hb_001040_120 0.1116657755 - - allantoinase, putative [Ricinus communis]
10 Hb_002070_070 0.1125788835 - - ATP binding protein, putative [Ricinus communis]
11 Hb_005368_010 0.1128517867 - - PREDICTED: umecyanin-like [Jatropha curcas]
12 Hb_001040_160 0.1131259397 - - glutaredoxin, grx, putative [Ricinus communis]
13 Hb_000329_490 0.1133360246 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
14 Hb_015026_060 0.1139651143 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
15 Hb_010180_040 0.1141744067 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
16 Hb_003716_020 0.114188933 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
17 Hb_033312_140 0.1158445244 - - RNA and export factor-binding family protein [Populus trichocarpa]
18 Hb_079326_010 0.1159600681 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
19 Hb_002475_050 0.1166364727 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_011497_010 0.1171263881 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]

Gene co-expression network

sample Hb_083043_010 Hb_083043_010 Hb_003711_040 Hb_003711_040 Hb_083043_010--Hb_003711_040 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_150204_010 Hb_150204_010 Hb_083043_010--Hb_150204_010 Hb_006455_090 Hb_006455_090 Hb_003711_040--Hb_006455_090 Hb_003711_040--Hb_002811_120 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270 Hb_007668_020 Hb_007668_020 Hb_003581_020--Hb_007668_020 Hb_003716_020 Hb_003716_020 Hb_003581_020--Hb_003716_020 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040 Hb_002811_120--Hb_004881_050 Hb_003434_060 Hb_003434_060 Hb_002811_120--Hb_003434_060 Hb_079326_010 Hb_079326_010 Hb_002811_120--Hb_079326_010 Hb_001863_110 Hb_001863_110 Hb_002811_120--Hb_001863_110 Hb_000316_030 Hb_000316_030 Hb_002811_120--Hb_000316_030 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_004881_050--Hb_000372_040 Hb_004881_050--Hb_003434_060 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_000329_490 Hb_000329_490 Hb_006114_020--Hb_000329_490 Hb_021409_170 Hb_021409_170 Hb_006114_020--Hb_021409_170 Hb_015763_030 Hb_015763_030 Hb_006114_020--Hb_015763_030 Hb_006114_020--Hb_004881_050 Hb_010180_040 Hb_010180_040 Hb_006114_020--Hb_010180_040 Hb_000335_010 Hb_000335_010 Hb_006114_020--Hb_000335_010 Hb_033312_140 Hb_033312_140 Hb_150204_010--Hb_033312_140 Hb_041392_010 Hb_041392_010 Hb_150204_010--Hb_041392_010 Hb_004198_010 Hb_004198_010 Hb_150204_010--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_150204_010--Hb_004450_010 Hb_150204_010--Hb_003434_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.896 12.9097 8.57405 20.5394 41.8503 74.8928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5824 10.2076 12.5798 13.7665 6.52984

CAGE analysis