Hb_150204_010

Information

Type -
Description -
Location Contig150204: 1376-2233
Sequence    

Annotation

kegg
ID cic:CICLE_v10004933mg
description hypothetical protein
nr
ID XP_012084540.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JU76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19808 PE=4 SV=1
Gene Ontology
ID GO:0016905
description zinc finger ccch domain-containing protein 48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150204_010 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_033312_140 0.0903304911 - - RNA and export factor-binding family protein [Populus trichocarpa]
3 Hb_041392_010 0.0984877142 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
4 Hb_004198_010 0.102072076 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
5 Hb_004450_010 0.1021636767 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
6 Hb_083043_010 0.1065747774 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
7 Hb_003434_060 0.1068586566 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
8 Hb_012193_010 0.1070076164 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_025814_010 0.1071855623 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
10 Hb_002701_080 0.1086359391 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
11 Hb_023001_050 0.1092750512 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
12 Hb_002217_310 0.1102919396 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
13 Hb_000307_200 0.1120318525 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
14 Hb_003656_140 0.1121092553 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
15 Hb_008714_020 0.1129622535 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
16 Hb_000230_330 0.1138027386 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
17 Hb_000849_070 0.1140566738 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
18 Hb_000956_030 0.1141161865 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
19 Hb_002196_020 0.1144465928 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002811_120 0.1168752024 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]

Gene co-expression network

sample Hb_150204_010 Hb_150204_010 Hb_033312_140 Hb_033312_140 Hb_150204_010--Hb_033312_140 Hb_041392_010 Hb_041392_010 Hb_150204_010--Hb_041392_010 Hb_004198_010 Hb_004198_010 Hb_150204_010--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_150204_010--Hb_004450_010 Hb_083043_010 Hb_083043_010 Hb_150204_010--Hb_083043_010 Hb_003434_060 Hb_003434_060 Hb_150204_010--Hb_003434_060 Hb_033312_140--Hb_041392_010 Hb_002774_070 Hb_002774_070 Hb_033312_140--Hb_002774_070 Hb_033312_140--Hb_004198_010 Hb_003656_140 Hb_003656_140 Hb_033312_140--Hb_003656_140 Hb_033312_140--Hb_003434_060 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_000606_080 Hb_000606_080 Hb_041392_010--Hb_000606_080 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_000956_030 Hb_000956_030 Hb_004198_010--Hb_000956_030 Hb_004198_010--Hb_003434_060 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_000120_500 Hb_000120_500 Hb_004198_010--Hb_000120_500 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_002044_060 Hb_002044_060 Hb_004450_010--Hb_002044_060 Hb_004450_010--Hb_000956_030 Hb_000768_110 Hb_000768_110 Hb_004450_010--Hb_000768_110 Hb_004370_030 Hb_004370_030 Hb_004450_010--Hb_004370_030 Hb_002272_180 Hb_002272_180 Hb_004450_010--Hb_002272_180 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040 Hb_003711_040 Hb_003711_040 Hb_083043_010--Hb_003711_040 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_000956_030 Hb_003434_060--Hb_000120_500 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.4346 48.2981 28.4762 77.3083 139.935 217.555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.9329 76.2908 62.7789 66.1036 14.6141

CAGE analysis