Hb_006114_020

Information

Type -
Description -
Location Contig6114: 17452-20803
Sequence    

Annotation

kegg
ID rcu:RCOM_1195930
description hypothetical protein
nr
ID XP_002528137.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQ68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1195930 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ribulose- bisphosphate carboxylase oxygenase large subunit n- chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50997: 17492-60078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006114_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_490 0.0734306447 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
3 Hb_021409_170 0.0750098249 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
4 Hb_015763_030 0.0852028305 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004881_050 0.0892358812 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_010180_040 0.094414446 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
7 Hb_000335_010 0.0944548172 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_005129_050 0.0949814007 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
9 Hb_000029_320 0.096868385 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
10 Hb_000300_580 0.096901989 - - PREDICTED: importin-5-like [Jatropha curcas]
11 Hb_002070_070 0.0970749221 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000436_040 0.0978157668 - - PREDICTED: transportin-1 [Jatropha curcas]
13 Hb_002687_190 0.1002663 - - prolyl oligopeptidase [Cicer arietinum]
14 Hb_000136_150 0.1005093642 - - hypothetical protein VITISV_038366 [Vitis vinifera]
15 Hb_004037_030 0.1007137796 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
16 Hb_007668_020 0.1011832998 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
17 Hb_002883_010 0.1034256538 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
18 Hb_022250_110 0.1037335657 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
19 Hb_083043_010 0.1039045552 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
20 Hb_002903_080 0.1049025318 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006114_020 Hb_006114_020 Hb_000329_490 Hb_000329_490 Hb_006114_020--Hb_000329_490 Hb_021409_170 Hb_021409_170 Hb_006114_020--Hb_021409_170 Hb_015763_030 Hb_015763_030 Hb_006114_020--Hb_015763_030 Hb_004881_050 Hb_004881_050 Hb_006114_020--Hb_004881_050 Hb_010180_040 Hb_010180_040 Hb_006114_020--Hb_010180_040 Hb_000335_010 Hb_000335_010 Hb_006114_020--Hb_000335_010 Hb_022250_110 Hb_022250_110 Hb_000329_490--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000329_490--Hb_000029_320 Hb_006882_010 Hb_006882_010 Hb_000329_490--Hb_006882_010 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580 Hb_002070_070 Hb_002070_070 Hb_000329_490--Hb_002070_070 Hb_003464_020 Hb_003464_020 Hb_021409_170--Hb_003464_020 Hb_001221_040 Hb_001221_040 Hb_021409_170--Hb_001221_040 Hb_000436_040 Hb_000436_040 Hb_021409_170--Hb_000436_040 Hb_000023_190 Hb_000023_190 Hb_021409_170--Hb_000023_190 Hb_000046_440 Hb_000046_440 Hb_021409_170--Hb_000046_440 Hb_000789_080 Hb_000789_080 Hb_021409_170--Hb_000789_080 Hb_015763_030--Hb_000029_320 Hb_015763_030--Hb_003464_020 Hb_015763_030--Hb_002070_070 Hb_015763_030--Hb_021409_170 Hb_001085_320 Hb_001085_320 Hb_015763_030--Hb_001085_320 Hb_015763_030--Hb_010180_040 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_008714_020 Hb_008714_020 Hb_010180_040--Hb_008714_020 Hb_005494_020 Hb_005494_020 Hb_010180_040--Hb_005494_020 Hb_000347_130 Hb_000347_130 Hb_010180_040--Hb_000347_130 Hb_000046_450 Hb_000046_450 Hb_010180_040--Hb_000046_450 Hb_000160_220 Hb_000160_220 Hb_010180_040--Hb_000160_220 Hb_031754_010 Hb_031754_010 Hb_000335_010--Hb_031754_010 Hb_000335_010--Hb_000457_060 Hb_000335_010--Hb_000789_080 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_000335_010--Hb_002883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5655 6.72557 4.36702 7.19718 21.3144 31.7023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4449 3.16047 4.49093 8.84918 6.70963

CAGE analysis