Hb_008714_020

Information

Type -
Description -
Location Contig8714: 16292-19423
Sequence    

Annotation

kegg
ID rcu:RCOM_1347400
description GTP-binding protein sar1, putative
nr
ID XP_012082878.1
description PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
swissprot
ID O04834
description GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1
trembl
ID A0A067K7M1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14016 PE=3 SV=1
Gene Ontology
ID GO:0005783
description gtp-binding protein sar1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61168: 16345-19376
cDNA
(Sanger)
(ID:Location)		 022_P19.ab1: 16346-19010

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008714_020 0.0 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
2 Hb_001019_170 0.0623090426 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
3 Hb_010180_040 0.0643408984 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
4 Hb_001040_160 0.0668041703 - - glutaredoxin, grx, putative [Ricinus communis]
5 Hb_027028_020 0.0688232962 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
6 Hb_000699_250 0.0693675675 - - Poly(rC)-binding protein, putative [Ricinus communis]
7 Hb_000046_450 0.0729036852 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
8 Hb_002716_140 0.0753741768 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
9 Hb_000866_030 0.0755677815 - - hypothetical protein RCOM_1615820 [Ricinus communis]
10 Hb_008695_120 0.0759040594 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
11 Hb_025012_010 0.0763726623 - - PREDICTED: importin-4 [Vitis vinifera]
12 Hb_006913_040 0.077217636 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
13 Hb_004450_010 0.0774958462 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
14 Hb_031091_010 0.0818525374 - - crooked neck protein, putative [Ricinus communis]
15 Hb_003362_040 0.083124581 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
16 Hb_005494_020 0.0834578395 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
17 Hb_003581_120 0.0855077894 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
18 Hb_000316_030 0.0855393518 - - zinc finger protein, putative [Ricinus communis]
19 Hb_004970_150 0.0858597126 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
20 Hb_000915_050 0.0867569633 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008714_020 Hb_008714_020 Hb_001019_170 Hb_001019_170 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_006913_040 Hb_006913_040 Hb_001019_170--Hb_006913_040 Hb_005494_020 Hb_005494_020 Hb_010180_040--Hb_005494_020 Hb_015763_030 Hb_015763_030 Hb_010180_040--Hb_015763_030 Hb_000347_130 Hb_000347_130 Hb_010180_040--Hb_000347_130 Hb_010180_040--Hb_000046_450 Hb_000160_220 Hb_000160_220 Hb_010180_040--Hb_000160_220 Hb_000316_030 Hb_000316_030 Hb_001040_160--Hb_000316_030 Hb_001609_010 Hb_001609_010 Hb_001040_160--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001040_160--Hb_063047_010 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010 Hb_025012_010 Hb_025012_010 Hb_001040_160--Hb_025012_010 Hb_000866_030 Hb_000866_030 Hb_027028_020--Hb_000866_030 Hb_000915_050 Hb_000915_050 Hb_027028_020--Hb_000915_050 Hb_003362_040 Hb_003362_040 Hb_027028_020--Hb_003362_040 Hb_027028_020--Hb_001019_170 Hb_027028_020--Hb_001040_160 Hb_000340_160 Hb_000340_160 Hb_000699_250--Hb_000340_160 Hb_042487_010 Hb_042487_010 Hb_000699_250--Hb_042487_010 Hb_000699_250--Hb_000046_450 Hb_004970_150 Hb_004970_150 Hb_000699_250--Hb_004970_150 Hb_004037_030 Hb_004037_030 Hb_000699_250--Hb_004037_030 Hb_006816_300 Hb_006816_300 Hb_000046_450--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_000046_450--Hb_001019_170 Hb_007849_020 Hb_007849_020 Hb_000046_450--Hb_007849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
240.709 171.191 62.521 114.296 231.924 405.615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
149.553 98.1311 129.261 113.518 54.7269

CAGE analysis