Hb_042487_010

Information

Type -
Description -
Location Contig42487: 6942-19684
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02340g
description POPTRDRAFT_255017; hypothetical protein
nr
ID XP_012090812.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
swissprot
ID Q9LUW5
description DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1
trembl
ID A0A067JGQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02878 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 53-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42000: 6764-19189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042487_010 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
2 Hb_000699_250 0.0617235564 - - Poly(rC)-binding protein, putative [Ricinus communis]
3 Hb_007849_020 0.0710008763 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_029142_010 0.0785426841 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
5 Hb_025012_010 0.0786440988 - - PREDICTED: importin-4 [Vitis vinifera]
6 Hb_006816_300 0.0792873921 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
7 Hb_000340_160 0.0801038404 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
8 Hb_000023_060 0.0810091102 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
9 Hb_010180_040 0.0811690326 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
10 Hb_004037_030 0.082009953 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
11 Hb_000436_040 0.0836017682 - - PREDICTED: transportin-1 [Jatropha curcas]
12 Hb_081879_030 0.0844465537 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
13 Hb_000347_130 0.0850697914 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
14 Hb_005494_020 0.0858713568 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
15 Hb_002105_080 0.0866871256 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000239_070 0.0875934243 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
17 Hb_001322_210 0.0885031908 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
18 Hb_000136_150 0.0897045788 - - hypothetical protein VITISV_038366 [Vitis vinifera]
19 Hb_006816_410 0.0920896208 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
20 Hb_000046_450 0.092426604 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]

Gene co-expression network

sample Hb_042487_010 Hb_042487_010 Hb_000699_250 Hb_000699_250 Hb_042487_010--Hb_000699_250 Hb_007849_020 Hb_007849_020 Hb_042487_010--Hb_007849_020 Hb_029142_010 Hb_029142_010 Hb_042487_010--Hb_029142_010 Hb_025012_010 Hb_025012_010 Hb_042487_010--Hb_025012_010 Hb_006816_300 Hb_006816_300 Hb_042487_010--Hb_006816_300 Hb_000340_160 Hb_000340_160 Hb_042487_010--Hb_000340_160 Hb_000699_250--Hb_000340_160 Hb_008714_020 Hb_008714_020 Hb_000699_250--Hb_008714_020 Hb_000046_450 Hb_000046_450 Hb_000699_250--Hb_000046_450 Hb_004970_150 Hb_004970_150 Hb_000699_250--Hb_004970_150 Hb_004037_030 Hb_004037_030 Hb_000699_250--Hb_004037_030 Hb_007849_020--Hb_006816_300 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_005494_020 Hb_005494_020 Hb_029142_010--Hb_005494_020 Hb_005122_080 Hb_005122_080 Hb_029142_010--Hb_005122_080 Hb_000567_010 Hb_000567_010 Hb_029142_010--Hb_000567_010 Hb_000107_040 Hb_000107_040 Hb_029142_010--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_029142_010--Hb_000023_060 Hb_000997_030 Hb_000997_030 Hb_029142_010--Hb_000997_030 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_006816_300--Hb_000250_070 Hb_000239_070 Hb_000239_070 Hb_000340_160--Hb_000239_070 Hb_000331_190 Hb_000331_190 Hb_000340_160--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_000340_160--Hb_024990_010 Hb_000340_160--Hb_000567_010 Hb_125092_020 Hb_125092_020 Hb_000340_160--Hb_125092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.4759 28.9262 7.71534 15.1466 42.3584 76.6311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7164 11.4052 19.0046 32.0267 14.351

CAGE analysis