Hb_002105_080

Information

Type -
Description -
Location Contig2105: 69111-73753
Sequence    

Annotation

kegg
ID rcu:RCOM_0757640
description leucyl-tRNA synthetase, putative (EC:6.1.1.4)
nr
ID XP_012066702.1
description PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q9P2J5
description Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2
trembl
ID A0A067LEE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00261 PE=3 SV=1
Gene Ontology
ID GO:0005737
description leucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21772: 68933-73769 , PASA_asmbl_21773: 69364-69571
cDNA
(Sanger)
(ID:Location)		 016_F15.ab1: 72120-73708

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_080 0.0 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_006816_300 0.0467354302 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
3 Hb_007849_020 0.0587070198 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_000116_280 0.0769178109 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
5 Hb_005295_040 0.0770144271 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
6 Hb_000227_380 0.0788055129 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
7 Hb_000250_070 0.0806741744 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
8 Hb_003018_160 0.0836651902 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
9 Hb_003866_020 0.0847167239 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006816_410 0.0849954763 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
11 Hb_042487_010 0.0866871256 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
12 Hb_000699_250 0.0875376309 - - Poly(rC)-binding protein, putative [Ricinus communis]
13 Hb_000002_440 0.0882927026 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_001433_190 0.0894983194 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
15 Hb_000046_450 0.0896795327 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_007904_180 0.0901342717 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
17 Hb_000365_060 0.0902857208 - - 5'->3' exoribonuclease, putative [Ricinus communis]
18 Hb_012016_020 0.0934036711 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
19 Hb_002471_210 0.0951559525 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
20 Hb_006588_050 0.0959096191 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_002105_080 Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_002105_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_002105_080--Hb_007849_020 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_000227_380 Hb_000227_380 Hb_002105_080--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_002105_080--Hb_000250_070 Hb_006816_300--Hb_007849_020 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_006816_300--Hb_000250_070 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_007849_020--Hb_000250_070 Hb_007849_020--Hb_000227_380 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_005399_020 Hb_005399_020 Hb_000116_280--Hb_005399_020 Hb_000116_280--Hb_003018_160 Hb_000367_290 Hb_000367_290 Hb_000116_280--Hb_000367_290 Hb_001975_020 Hb_001975_020 Hb_000116_280--Hb_001975_020 Hb_000116_280--Hb_006816_300 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_005295_040--Hb_001975_020 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000475_020 Hb_000475_020 Hb_000250_070--Hb_000475_020 Hb_000250_070--Hb_002471_210 Hb_000250_070--Hb_002291_070 Hb_001811_120 Hb_001811_120 Hb_000250_070--Hb_001811_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
222.853 145.171 31.7246 42.6045 226.682 317.747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.5208 36.1319 103.577 98.5454 54.2144

CAGE analysis