Hb_000250_070

Information

Type -
Description -
Location Contig250: 168433-175846
Sequence    

Annotation

kegg
ID rcu:RCOM_1135970
description hypothetical protein
nr
ID XP_012078459.1
description PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
swissprot
ID Q9FGI1
description E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana GN=At5g58410 PE=3 SV=1
trembl
ID A0A067KC49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13148 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase listerin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26188: 168442-173593 , PASA_asmbl_26189: 173753-188261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000250_070 0.0 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
2 Hb_007849_020 0.0542477543 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
3 Hb_000475_020 0.0582714365 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
4 Hb_002471_210 0.0637132728 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
5 Hb_002291_070 0.0661363328 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
6 Hb_006816_300 0.0746396826 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
7 Hb_001811_120 0.077126115 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
8 Hb_002105_080 0.0806741744 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_002043_170 0.0808482045 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
10 Hb_001196_060 0.082220667 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
11 Hb_000096_180 0.0824142828 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_007904_180 0.0827879211 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
13 Hb_000300_580 0.0829691285 - - PREDICTED: importin-5-like [Jatropha curcas]
14 Hb_046615_020 0.083164865 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
15 Hb_027073_060 0.0846485217 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
16 Hb_007885_070 0.0870288515 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
17 Hb_003018_160 0.0878903485 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
18 Hb_147737_010 0.0880741167 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
19 Hb_002883_010 0.0899994734 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
20 Hb_001301_210 0.0906115365 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]

Gene co-expression network

sample Hb_000250_070 Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000250_070--Hb_007849_020 Hb_000475_020 Hb_000475_020 Hb_000250_070--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_000250_070--Hb_002471_210 Hb_002291_070 Hb_002291_070 Hb_000250_070--Hb_002291_070 Hb_006816_300 Hb_006816_300 Hb_000250_070--Hb_006816_300 Hb_001811_120 Hb_001811_120 Hb_000250_070--Hb_001811_120 Hb_007849_020--Hb_006816_300 Hb_007849_020--Hb_002471_210 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_007849_020--Hb_002291_070 Hb_000475_020--Hb_001811_120 Hb_000475_020--Hb_002471_210 Hb_000475_020--Hb_007849_020 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_002471_210--Hb_002291_070 Hb_002471_210--Hb_001811_120 Hb_001322_210 Hb_001322_210 Hb_002471_210--Hb_001322_210 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_002291_070--Hb_001322_210 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_001811_120--Hb_002291_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.523 21.0579 6.97794 7.97418 38.7667 43.7588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2801 6.12338 13.6382 13.3032 15.9795

CAGE analysis