Hb_000780_220

Information

Type transcription factor
Description TF Family: GRAS
Location Contig780: 243245-244888
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16230g
description POPTRDRAFT_664861; hypothetical protein
nr
ID XP_012081427.1
description PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
swissprot
ID Q9LDL7
description Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1
trembl
ID A0A067KCD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18469 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like transcription factor pat1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57930: 241416-243550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_220 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
2 Hb_002291_070 0.0610565089 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
3 Hb_001322_210 0.0662469918 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
4 Hb_002471_210 0.0726096127 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
5 Hb_000743_040 0.0830213788 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
6 Hb_007849_020 0.0832869537 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
7 Hb_000046_450 0.0832964348 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
8 Hb_006649_060 0.0847748691 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007586_030 0.0870890597 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_000600_070 0.0873553721 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
11 Hb_000475_020 0.0885668064 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
12 Hb_017075_010 0.0891149326 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
13 Hb_002400_240 0.0895956858 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
14 Hb_000347_130 0.0909723157 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
15 Hb_056196_050 0.0921754403 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
16 Hb_002301_080 0.0932463696 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
17 Hb_009411_010 0.0937171485 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
18 Hb_003044_020 0.0939997517 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
19 Hb_000283_070 0.0948446704 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
20 Hb_000072_350 0.0958535522 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000780_220 Hb_000780_220 Hb_002291_070 Hb_002291_070 Hb_000780_220--Hb_002291_070 Hb_001322_210 Hb_001322_210 Hb_000780_220--Hb_001322_210 Hb_002471_210 Hb_002471_210 Hb_000780_220--Hb_002471_210 Hb_000743_040 Hb_000743_040 Hb_000780_220--Hb_000743_040 Hb_007849_020 Hb_007849_020 Hb_000780_220--Hb_007849_020 Hb_000046_450 Hb_000046_450 Hb_000780_220--Hb_000046_450 Hb_002291_070--Hb_002471_210 Hb_002291_070--Hb_007849_020 Hb_000475_020 Hb_000475_020 Hb_002291_070--Hb_000475_020 Hb_000250_070 Hb_000250_070 Hb_002291_070--Hb_000250_070 Hb_002291_070--Hb_001322_210 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_001322_210--Hb_002471_210 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_001322_210--Hb_007849_020 Hb_002471_210--Hb_007849_020 Hb_002471_210--Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_002471_210--Hb_001811_120 Hb_002471_210--Hb_000250_070 Hb_000329_090 Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_010381_060 Hb_010381_060 Hb_000743_040--Hb_010381_060 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_000699_250 Hb_000699_250 Hb_000046_450--Hb_000699_250 Hb_008714_020 Hb_008714_020 Hb_000046_450--Hb_008714_020 Hb_000046_450--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_001019_170 Hb_001019_170 Hb_000046_450--Hb_001019_170 Hb_000046_450--Hb_007849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8527 23.6107 4.367 11.7133 34.1662 40.7444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4103 7.69937 18.5174 15.5863 17.6525

CAGE analysis