Hb_002471_210

Information

Type -
Description -
Location Contig2471: 176194-211783
Sequence    

Annotation

kegg
ID rcu:RCOM_1148800
description tho2 protein, putative
nr
ID XP_012072357.1
description PREDICTED: THO complex subunit 2 [Jatropha curcas]
swissprot
ID F4IAT2
description THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1
trembl
ID B9SNG7
description Tho2 protein, putative OS=Ricinus communis GN=RCOM_1148800 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tho complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25663: 177851-182106 , PASA_asmbl_25664: 182454-185969 , PASA_asmbl_25665: 186091-199040 , PASA_asmbl_25667: 193834-194104 , PASA_asmbl_25671: 199895-203969 , PASA_asmbl_25672: 204135-211533 , PASA_asmbl_25673: 210723-211438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_210 0.0 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
2 Hb_007849_020 0.0484997838 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
3 Hb_002291_070 0.0486528135 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
4 Hb_000475_020 0.0549191462 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
5 Hb_001811_120 0.0631985052 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
6 Hb_000250_070 0.0637132728 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
7 Hb_001322_210 0.071869349 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
8 Hb_000780_220 0.0726096127 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
9 Hb_000227_380 0.0727842621 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
10 Hb_020665_030 0.0729806583 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000997_030 0.0785818247 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
12 Hb_116929_010 0.0797436899 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
13 Hb_147737_010 0.080817756 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
14 Hb_006816_300 0.0812551309 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
15 Hb_001080_270 0.0813486476 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
16 Hb_000347_130 0.0815200454 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
17 Hb_002301_080 0.0820258097 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
18 Hb_175338_020 0.082899815 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
19 Hb_001417_050 0.0834849178 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
20 Hb_003623_030 0.0849929117 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_210 Hb_002471_210 Hb_007849_020 Hb_007849_020 Hb_002471_210--Hb_007849_020 Hb_002291_070 Hb_002291_070 Hb_002471_210--Hb_002291_070 Hb_000475_020 Hb_000475_020 Hb_002471_210--Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_002471_210--Hb_001811_120 Hb_000250_070 Hb_000250_070 Hb_002471_210--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002471_210--Hb_001322_210 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_007849_020--Hb_002291_070 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_002291_070--Hb_000475_020 Hb_002291_070--Hb_000250_070 Hb_002291_070--Hb_001322_210 Hb_000475_020--Hb_001811_120 Hb_000475_020--Hb_000250_070 Hb_000475_020--Hb_007849_020 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_001811_120--Hb_000250_070 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_001811_120--Hb_002291_070 Hb_000250_070--Hb_006816_300 Hb_001322_210--Hb_000780_220 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_001322_210--Hb_007849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2229 21.7875 6.63486 7.96802 32.8765 39.8516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65127 8.14957 12.5884 15.2858 15.0288

CAGE analysis