Hb_007849_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig7849: 19878-26155
Sequence    

Annotation

kegg
ID rcu:RCOM_0609050
description cell division control protein, putative
nr
ID XP_002521973.1
description cell division control protein, putative [Ricinus communis]
swissprot
ID P92948
description Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2
trembl
ID B9S7K4
description Cell division control protein, putative OS=Ricinus communis GN=RCOM_0609050 PE=4 SV=1
Gene Ontology
ID GO:0009507
description cell division cycle 5-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58065: 19551-26243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007849_020 0.0 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
2 Hb_006816_300 0.0467131657 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
3 Hb_002471_210 0.0484997838 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
4 Hb_000250_070 0.0542477543 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
5 Hb_000227_380 0.0575263259 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
6 Hb_002105_080 0.0587070198 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_002291_070 0.0605832442 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
8 Hb_000475_020 0.063607245 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
9 Hb_042487_010 0.0710008763 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
10 Hb_175338_020 0.0711992224 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_147737_010 0.0739977651 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
12 Hb_000023_060 0.0743128915 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
13 Hb_001322_210 0.0745514362 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
14 Hb_000239_070 0.0758512518 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
15 Hb_003018_160 0.0771658698 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
16 Hb_002883_010 0.0775137539 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
17 Hb_000046_450 0.0791995621 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
18 Hb_000347_130 0.0795183273 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
19 Hb_000002_440 0.0800290425 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
20 Hb_000342_090 0.080107049 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007849_020 Hb_007849_020 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_006816_300--Hb_000250_070 Hb_002471_210--Hb_002291_070 Hb_000475_020 Hb_000475_020 Hb_002471_210--Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_002471_210--Hb_001811_120 Hb_002471_210--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002471_210--Hb_001322_210 Hb_000250_070--Hb_000475_020 Hb_000250_070--Hb_002291_070 Hb_000250_070--Hb_001811_120 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_002105_080--Hb_000227_380 Hb_002105_080--Hb_000250_070 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_002291_070--Hb_000475_020 Hb_002291_070--Hb_001322_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7701 26.2516 7.90725 10.4163 43.6469 53.3445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5355 8.5346 17.6483 21.3556 14.5365

CAGE analysis