Hb_005295_040

Information

Type -
Description -
Location Contig5295: 63595-71091
Sequence    

Annotation

kegg
ID rcu:RCOM_0814100
description nuclear acid binding protein, putative
nr
ID XP_012089580.1
description PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
swissprot
ID Q9LEB3
description Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1
trembl
ID A0A067JJK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01681 PE=4 SV=1
Gene Ontology
ID GO:0097159
description polyadenylate-binding protein rbp47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47277: 63604-71041
cDNA
(Sanger)
(ID:Location)		 012_C24.ab1: 63604-65960 , 028_P20.ab1: 63604-65790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005295_040 0.0 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
2 Hb_004724_360 0.0621438228 - - OTU-like cysteine protease family protein [Populus trichocarpa]
3 Hb_002725_070 0.0622784395 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
4 Hb_001975_020 0.0696646176 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
5 Hb_000367_290 0.0701644509 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
6 Hb_005635_010 0.0731754227 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
7 Hb_000327_310 0.0752368226 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
8 Hb_153547_010 0.0752780205 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
9 Hb_000076_080 0.0759320253 - - PREDICTED: protein MOS2 [Jatropha curcas]
10 Hb_042083_070 0.0762936634 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
11 Hb_031754_010 0.0763694363 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
12 Hb_000805_310 0.0767067598 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
13 Hb_002105_080 0.0770144271 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_001431_070 0.080192129 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
15 Hb_000116_280 0.0803194218 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
16 Hb_001504_160 0.0808153559 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
17 Hb_000317_440 0.0810859194 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
18 Hb_117950_020 0.0822768728 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
19 Hb_000631_150 0.0829438571 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
20 Hb_002133_030 0.083008617 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005295_040 Hb_005295_040 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_001975_020 Hb_001975_020 Hb_005295_040--Hb_001975_020 Hb_000367_290 Hb_000367_290 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002820_040 Hb_002820_040 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_001975_020--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000367_290--Hb_000116_280 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_005635_010--Hb_000814_090 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_005635_010--Hb_000078_100 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
708.649 360.197 84.8464 127.922 810.903 898.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
280.684 176.89 327.07 292.155 110.578

CAGE analysis