Hb_042083_070

Information

Type -
Description -
Location Contig42083: 56293-61226
Sequence    

Annotation

kegg
ID rcu:RCOM_1250130
description Glycogen synthase kinase-3 beta, putative (EC:2.7.11.26)
nr
ID XP_002522231.1
description Glycogen synthase kinase-3 beta, putative [Ricinus communis]
swissprot
ID Q39011
description Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2
trembl
ID B9S8B2
description Glycogen synthase kinase-3 beta, putative OS=Ricinus communis GN=RCOM_1250130 PE=4 SV=1
Gene Ontology
ID GO:0005886
description shaggy-related protein kinase eta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41582: 56453-61201 , PASA_asmbl_41584: 59813-60019
cDNA
(Sanger)
(ID:Location)		 040_C09.ab1: 58255-61138

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042083_070 0.0 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
2 Hb_002725_070 0.0649262151 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
3 Hb_005295_040 0.0762936634 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
4 Hb_000462_150 0.0774262462 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
5 Hb_005914_230 0.0781657519 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
6 Hb_003384_030 0.0783933019 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
7 Hb_004310_060 0.079097308 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_001975_020 0.0796156365 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
9 Hb_001019_170 0.0813723442 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
10 Hb_001366_040 0.0820138104 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
11 Hb_001969_040 0.0834197368 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_002928_060 0.0834779887 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
13 Hb_005314_010 0.0844741465 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_018663_020 0.084521377 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
15 Hb_000814_090 0.0850710126 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001226_180 0.085765101 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
17 Hb_000001_180 0.0862607868 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
18 Hb_031754_010 0.0865809426 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
19 Hb_001498_030 0.0871300303 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
20 Hb_002818_040 0.087375711 - - tRNA synthetase-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_042083_070 Hb_042083_070 Hb_002725_070 Hb_002725_070 Hb_042083_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_042083_070--Hb_005295_040 Hb_000462_150 Hb_000462_150 Hb_042083_070--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_042083_070--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_042083_070--Hb_003384_030 Hb_004310_060 Hb_004310_060 Hb_042083_070--Hb_004310_060 Hb_002725_070--Hb_005295_040 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002820_040 Hb_002820_040 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_001975_020 Hb_001975_020 Hb_005295_040--Hb_001975_020 Hb_000367_290 Hb_000367_290 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_005914_230--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_005914_230--Hb_018663_020 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_005914_230--Hb_004310_060 Hb_005914_230--Hb_000001_180 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_003384_030--Hb_000001_180 Hb_003384_030--Hb_002818_040 Hb_003384_030--Hb_018663_020 Hb_003384_030--Hb_001969_040 Hb_004310_060--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_004310_060--Hb_008725_250 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_018663_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
648.279 285.698 103.824 138.593 655.931 649.926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
334.539 146.176 330.29 225.639 49.6239

CAGE analysis