Hb_001584_110

Information

Type -
Description -
Location Contig1584: 81494-86462
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00880g
description POPTRDRAFT_570700; importin alpha-1 subunit family protein
nr
ID XP_012088870.1
description PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
swissprot
ID O80480
description Importin subunit alpha-4 OS=Arabidopsis thaliana GN=IMPA4 PE=1 SV=1
trembl
ID A0A067JHF4
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_23204 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13963: 81628-86474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_110 0.0 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
2 Hb_000230_330 0.0527356579 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
3 Hb_002874_070 0.0595859208 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
4 Hb_014568_030 0.0643852523 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_011282_030 0.0657264168 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
6 Hb_000390_060 0.0666907332 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
7 Hb_000462_150 0.0679716482 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
8 Hb_000077_050 0.0685042117 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_011316_110 0.075977735 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
10 Hb_041091_010 0.0765610604 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
11 Hb_002928_060 0.0792749683 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
12 Hb_022256_040 0.079426182 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
13 Hb_000034_050 0.0816619458 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
14 Hb_000048_140 0.0825270264 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
15 Hb_002818_040 0.082545448 - - tRNA synthetase-related family protein [Populus trichocarpa]
16 Hb_001504_160 0.082635271 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
17 Hb_003434_060 0.0860150207 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
18 Hb_000236_250 0.0864760688 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007407_040 0.0865090356 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000078_130 0.0874116295 - - -

Gene co-expression network

sample Hb_001584_110 Hb_001584_110 Hb_000230_330 Hb_000230_330 Hb_001584_110--Hb_000230_330 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_000390_060 Hb_000390_060 Hb_001584_110--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_001584_110--Hb_000462_150 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_014568_030--Hb_011282_030 Hb_011282_030--Hb_000230_330 Hb_011282_030--Hb_022256_040 Hb_011282_030--Hb_000462_150 Hb_010222_030 Hb_010222_030 Hb_011282_030--Hb_010222_030 Hb_000390_060--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000390_060--Hb_000120_500 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000316_030 Hb_000316_030 Hb_000390_060--Hb_000316_030 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_000462_150--Hb_002818_040 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.46 42.4605 29.0938 41.3051 169.113 209.653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.9201 52.8552 118.31 43.8119 35.0853

CAGE analysis