Hb_004440_100

Information

Type -
Description -
Location Contig4440: 96199-98731
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13080g
description POPTRDRAFT_820040; hypothetical protein
nr
ID XP_012079661.1
description PREDICTED: transmembrane protein 53 [Jatropha curcas]
swissprot
ID Q6DJC8
description Transmembrane protein 53-B OS=Xenopus laevis GN=tmem53-b PE=2 SV=1
trembl
ID A0A067K690
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42773: 96105-98577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_100 0.0 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
2 Hb_002874_070 0.0644077347 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
3 Hb_005730_030 0.0833204653 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_022256_040 0.0870033669 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
5 Hb_000369_060 0.0909536004 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
6 Hb_006091_030 0.0923430649 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
7 Hb_001584_110 0.0923586473 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
8 Hb_001017_040 0.0972882655 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
9 Hb_011316_110 0.0983727244 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
10 Hb_000236_250 0.1015916 - - conserved hypothetical protein [Ricinus communis]
11 Hb_185467_020 0.1016327821 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_007407_040 0.1017510895 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000107_100 0.1038103064 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
14 Hb_002039_010 0.104682232 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
15 Hb_004055_040 0.1053192667 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
16 Hb_003581_140 0.1063924786 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
17 Hb_098993_010 0.1066438663 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
18 Hb_010436_030 0.1071506899 - - Ribonuclease III, putative [Ricinus communis]
19 Hb_001001_060 0.1077456284 - - -
20 Hb_000230_330 0.1082045782 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]

Gene co-expression network

sample Hb_004440_100 Hb_004440_100 Hb_002874_070 Hb_002874_070 Hb_004440_100--Hb_002874_070 Hb_005730_030 Hb_005730_030 Hb_004440_100--Hb_005730_030 Hb_022256_040 Hb_022256_040 Hb_004440_100--Hb_022256_040 Hb_000369_060 Hb_000369_060 Hb_004440_100--Hb_000369_060 Hb_006091_030 Hb_006091_030 Hb_004440_100--Hb_006091_030 Hb_001584_110 Hb_001584_110 Hb_004440_100--Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_004055_040 Hb_004055_040 Hb_005730_030--Hb_004055_040 Hb_140171_010 Hb_140171_010 Hb_005730_030--Hb_140171_010 Hb_000244_250 Hb_000244_250 Hb_005730_030--Hb_000244_250 Hb_005730_030--Hb_002928_060 Hb_022408_010 Hb_022408_010 Hb_005730_030--Hb_022408_010 Hb_004204_080 Hb_004204_080 Hb_005730_030--Hb_004204_080 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_002631_050 Hb_002631_050 Hb_022256_040--Hb_002631_050 Hb_000733_060 Hb_000733_060 Hb_022256_040--Hb_000733_060 Hb_000230_330 Hb_000230_330 Hb_022256_040--Hb_000230_330 Hb_022256_040--Hb_001584_110 Hb_000369_060--Hb_006091_030 Hb_011639_050 Hb_011639_050 Hb_000369_060--Hb_011639_050 Hb_002400_270 Hb_002400_270 Hb_000369_060--Hb_002400_270 Hb_000369_060--Hb_002874_070 Hb_001846_060 Hb_001846_060 Hb_000369_060--Hb_001846_060 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_001584_110--Hb_000230_330 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_000390_060 Hb_000390_060 Hb_001584_110--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_001584_110--Hb_000462_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0081 8.65545 9.06256 8.31272 44.415 43.8518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.003 12.5427 40.6293 19.6733 9.20191

CAGE analysis