Hb_001846_060

Information

Type -
Description -
Location Contig1846: 106570-109383
Sequence    

Annotation

kegg
ID rcu:RCOM_0992860
description hypothetical protein
nr
ID XP_002521003.1
description hypothetical protein RCOM_0992860 [Ricinus communis]
swissprot
ID F4INW9
description Probable myosin-binding protein 4 OS=Arabidopsis thaliana GN=MYOB4 PE=3 SV=1
trembl
ID B9S4U6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0992860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18073: 101367-124461 , PASA_asmbl_18080: 108035-108415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001846_060 0.0 - - hypothetical protein RCOM_0992860 [Ricinus communis]
2 Hb_000742_250 0.1000304999 - - Tubulin beta-6 chain [Gossypium arboreum]
3 Hb_002400_270 0.1037005688 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
4 Hb_000369_060 0.1065651676 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_011644_020 0.1117091984 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
6 Hb_007786_010 0.1117878088 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
7 Hb_011316_110 0.1153511129 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
8 Hb_000540_140 0.1155752169 - - zinc binding dehydrogenase, putative [Ricinus communis]
9 Hb_011282_030 0.1173815126 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
10 Hb_000729_050 0.1228134024 - - Pinin, putative [Ricinus communis]
11 Hb_001584_110 0.1231927156 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
12 Hb_011639_050 0.1248780073 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004440_100 0.1265668073 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
14 Hb_000465_120 0.1267267049 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
15 Hb_063716_010 0.1284531675 - - phopholipase d alpha, putative [Ricinus communis]
16 Hb_002874_070 0.1297798367 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
17 Hb_000329_390 0.130037037 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
18 Hb_000544_040 0.1307257911 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
19 Hb_009421_100 0.131386408 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
20 Hb_000243_320 0.1322692454 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001846_060 Hb_001846_060 Hb_000742_250 Hb_000742_250 Hb_001846_060--Hb_000742_250 Hb_002400_270 Hb_002400_270 Hb_001846_060--Hb_002400_270 Hb_000369_060 Hb_000369_060 Hb_001846_060--Hb_000369_060 Hb_011644_020 Hb_011644_020 Hb_001846_060--Hb_011644_020 Hb_007786_010 Hb_007786_010 Hb_001846_060--Hb_007786_010 Hb_011316_110 Hb_011316_110 Hb_001846_060--Hb_011316_110 Hb_000742_250--Hb_002400_270 Hb_006649_080 Hb_006649_080 Hb_000742_250--Hb_006649_080 Hb_185467_010 Hb_185467_010 Hb_000742_250--Hb_185467_010 Hb_000742_250--Hb_007786_010 Hb_004096_020 Hb_004096_020 Hb_000742_250--Hb_004096_020 Hb_000327_240 Hb_000327_240 Hb_002400_270--Hb_000327_240 Hb_002400_270--Hb_011316_110 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_002400_270--Hb_000369_060 Hb_001416_040 Hb_001416_040 Hb_002400_270--Hb_001416_040 Hb_006091_030 Hb_006091_030 Hb_000369_060--Hb_006091_030 Hb_011639_050 Hb_011639_050 Hb_000369_060--Hb_011639_050 Hb_004440_100 Hb_004440_100 Hb_000369_060--Hb_004440_100 Hb_002874_070 Hb_002874_070 Hb_000369_060--Hb_002874_070 Hb_079326_010 Hb_079326_010 Hb_011644_020--Hb_079326_010 Hb_000684_180 Hb_000684_180 Hb_011644_020--Hb_000684_180 Hb_000540_140 Hb_000540_140 Hb_011644_020--Hb_000540_140 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_001195_030 Hb_001195_030 Hb_011644_020--Hb_001195_030 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_007447_010 Hb_007447_010 Hb_011316_110--Hb_007447_010 Hb_001584_110 Hb_001584_110 Hb_011316_110--Hb_001584_110 Hb_000729_050 Hb_000729_050 Hb_011316_110--Hb_000729_050 Hb_022256_040 Hb_022256_040 Hb_011316_110--Hb_022256_040 Hb_000184_110 Hb_000184_110 Hb_011316_110--Hb_000184_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3071 1.75955 2.94804 3.02626 17.9874 15.4615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.12607 2.71622 9.67873 3.69931 4.24987

CAGE analysis