Hb_002874_070

Information

Type -
Description -
Location Contig2874: 45101-49451
Sequence    

Annotation

kegg
ID rcu:RCOM_0205000
description Poly(rC)-binding protein, putative (EC:3.1.2.15)
nr
ID XP_012076309.1
description PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
swissprot
ID Q9SZH4
description RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=2 SV=1
trembl
ID A0A067KNN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07000 PE=4 SV=1
Gene Ontology
ID GO:0003723
description poly -binding protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29980: 45163-49442 , PASA_asmbl_29981: 48748-49047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_070 0.0 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
2 Hb_001584_110 0.0595859208 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
3 Hb_004440_100 0.0644077347 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
4 Hb_185467_020 0.0743075245 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_002928_060 0.0745250341 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
6 Hb_022256_040 0.0748157662 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
7 Hb_001936_050 0.0754355824 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
8 Hb_005730_030 0.0756336886 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
9 Hb_000230_330 0.0764946669 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
10 Hb_000462_150 0.0778135675 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
11 Hb_000490_030 0.079227084 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
12 Hb_006091_030 0.0814827337 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
13 Hb_002818_040 0.0836690378 - - tRNA synthetase-related family protein [Populus trichocarpa]
14 Hb_041091_010 0.0877186913 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
15 Hb_004055_040 0.0877509815 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
16 Hb_002631_050 0.089105171 - - membrane associated ring finger 1,8, putative [Ricinus communis]
17 Hb_000340_510 0.0918493158 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
18 Hb_011639_050 0.0947272127 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000369_060 0.0947907017 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_001504_160 0.0947945114 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_070 Hb_002874_070 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_000230_330 Hb_000230_330 Hb_001584_110--Hb_000230_330 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_000390_060 Hb_000390_060 Hb_001584_110--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_001584_110--Hb_000462_150 Hb_005730_030 Hb_005730_030 Hb_004440_100--Hb_005730_030 Hb_004440_100--Hb_022256_040 Hb_000369_060 Hb_000369_060 Hb_004440_100--Hb_000369_060 Hb_006091_030 Hb_006091_030 Hb_004440_100--Hb_006091_030 Hb_004440_100--Hb_001584_110 Hb_008453_150 Hb_008453_150 Hb_185467_020--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_185467_020--Hb_002631_050 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_185467_020--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_185467_020--Hb_001981_070 Hb_004055_040 Hb_004055_040 Hb_002928_060--Hb_004055_040 Hb_002928_060--Hb_005730_030 Hb_002928_060--Hb_000230_330 Hb_001871_040 Hb_001871_040 Hb_002928_060--Hb_001871_040 Hb_003362_040 Hb_003362_040 Hb_002928_060--Hb_003362_040 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_022256_040--Hb_002631_050 Hb_000733_060 Hb_000733_060 Hb_022256_040--Hb_000733_060 Hb_022256_040--Hb_000230_330 Hb_022256_040--Hb_001584_110 Hb_000490_030 Hb_000490_030 Hb_001936_050--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_001936_050--Hb_000358_080 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_000340_510 Hb_000340_510 Hb_001936_050--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
227.986 60.8889 52.431 46.1857 230.28 265.691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.186 77.9929 206.539 68.0092 35.6658

CAGE analysis