Hb_000358_080

Information

Type -
Description -
Location Contig358: 105595-112505
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21800g
description POPTRDRAFT_709698, POPTRDRAFT_844402; hypothetical protein
nr
ID KHG12509.1
description Ribonuclease 3 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NL14
description Ribonuclease 3 OS=Gossypium arboreum GN=F383_04608 PE=4 SV=1
Gene Ontology
ID GO:0009941
description ribonuclease 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36888: 105585-111254
cDNA
(Sanger)
(ID:Location)		 004_C24.ab1: 109359-111243 , 023_F04.ab1: 110714-111245 , 044_N04.ab1: 109412-111245 , 047_A19.ab1: 109372-111245 , 051_I01.ab1: 109384-111245 , 051_P04.ab1: 109384-111245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_080 0.0 - - Ribonuclease 3 [Gossypium arboreum]
2 Hb_000490_030 0.0652043634 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
3 Hb_007943_080 0.0688922623 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
4 Hb_001936_050 0.0777806743 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
5 Hb_000138_040 0.077905542 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
6 Hb_006091_030 0.0801754061 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
7 Hb_010710_010 0.0860552891 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
8 Hb_003581_140 0.0871475632 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
9 Hb_000608_120 0.0909859793 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
10 Hb_000134_350 0.0925581338 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
11 Hb_000088_010 0.0940682816 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_029281_010 0.095360247 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
13 Hb_002903_110 0.0964400665 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
14 Hb_000340_510 0.0970764021 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_000120_050 0.0971847114 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
16 Hb_000592_050 0.097429068 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
17 Hb_000172_400 0.0980359103 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_005839_120 0.0995001866 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
19 Hb_000078_130 0.099661105 - - -
20 Hb_001817_180 0.0998776277 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_080 Hb_000358_080 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_000490_030--Hb_001936_050 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000490_030--Hb_006091_030 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_002874_070 Hb_002874_070 Hb_000490_030--Hb_002874_070 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_003861_080 Hb_003861_080 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000134_350 Hb_000134_350 Hb_007943_080--Hb_000134_350 Hb_001936_050--Hb_002874_070 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_001936_050--Hb_000340_510 Hb_001817_180 Hb_001817_180 Hb_000138_040--Hb_001817_180 Hb_000138_040--Hb_000134_350 Hb_009382_020 Hb_009382_020 Hb_000138_040--Hb_009382_020 Hb_000138_040--Hb_029281_010 Hb_001274_020 Hb_001274_020 Hb_000138_040--Hb_001274_020 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_000230_080 Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_000413_180 Hb_000413_180 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
588.828 300.736 70.4717 66.1478 618.871 631.292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
369.253 259.954 678.964 193.173 75.1804

CAGE analysis