Hb_000016_110

Information

Type -
Description -
Location Contig16: 154195-155985
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13730g
description POPTRDRAFT_422197; hypothetical protein
nr
ID XP_012090748.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
swissprot
ID Q9SZK1
description Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
trembl
ID B9I4E0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s13730g PE=4 SV=2
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at4g38010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14275: 154594-154869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
2 Hb_005399_010 0.0784962736 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
3 Hb_000497_140 0.0808482978 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
4 Hb_006091_030 0.0820017271 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
5 Hb_022288_010 0.0884036268 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
6 Hb_041091_010 0.0919490126 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
7 Hb_012016_020 0.0933873691 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
8 Hb_000106_040 0.0958841549 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
9 Hb_000413_130 0.0979042743 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
10 Hb_001871_040 0.1015269453 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
11 Hb_001431_070 0.1025256462 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
12 Hb_008528_010 0.1026668979 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
13 Hb_029281_010 0.1040291601 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
14 Hb_000490_030 0.1054692145 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
15 Hb_000161_030 0.1058716233 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
16 Hb_011496_010 0.106762655 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
17 Hb_000208_290 0.1077254633 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
18 Hb_001040_170 0.1109732601 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_002341_030 0.1110197304 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
20 Hb_000086_590 0.1129599949 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000016_110 Hb_000016_110 Hb_005399_010 Hb_005399_010 Hb_000016_110--Hb_005399_010 Hb_000497_140 Hb_000497_140 Hb_000016_110--Hb_000497_140 Hb_006091_030 Hb_006091_030 Hb_000016_110--Hb_006091_030 Hb_022288_010 Hb_022288_010 Hb_000016_110--Hb_022288_010 Hb_041091_010 Hb_041091_010 Hb_000016_110--Hb_041091_010 Hb_012016_020 Hb_012016_020 Hb_000016_110--Hb_012016_020 Hb_005399_010--Hb_012016_020 Hb_005399_010--Hb_000497_140 Hb_001871_040 Hb_001871_040 Hb_005399_010--Hb_001871_040 Hb_000106_040 Hb_000106_040 Hb_005399_010--Hb_000106_040 Hb_001431_070 Hb_001431_070 Hb_005399_010--Hb_001431_070 Hb_000497_140--Hb_006091_030 Hb_000497_140--Hb_000106_040 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130 Hb_000086_590 Hb_000086_590 Hb_000497_140--Hb_000086_590 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_008528_010 Hb_008528_010 Hb_022288_010--Hb_008528_010 Hb_000805_310 Hb_000805_310 Hb_022288_010--Hb_000805_310 Hb_174865_050 Hb_174865_050 Hb_022288_010--Hb_174865_050 Hb_011496_010 Hb_011496_010 Hb_022288_010--Hb_011496_010 Hb_000208_290 Hb_000208_290 Hb_022288_010--Hb_000208_290 Hb_001584_110 Hb_001584_110 Hb_041091_010--Hb_001584_110 Hb_000803_150 Hb_000803_150 Hb_041091_010--Hb_000803_150 Hb_041091_010--Hb_001871_040 Hb_000077_050 Hb_000077_050 Hb_041091_010--Hb_000077_050 Hb_001504_160 Hb_001504_160 Hb_041091_010--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_041091_010--Hb_000076_080 Hb_002341_030 Hb_002341_030 Hb_012016_020--Hb_002341_030 Hb_012016_020--Hb_001871_040 Hb_000453_080 Hb_000453_080 Hb_012016_020--Hb_000453_080 Hb_000906_060 Hb_000906_060 Hb_012016_020--Hb_000906_060 Hb_012016_020--Hb_008528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20141 1.50331 0.248093 0.301586 4.36498 5.56202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42954 1.24527 3.07528 0.951964 0.761392

CAGE analysis