Hb_000077_130

Information

Type -
Description -
Location Contig77: 104017-109338
Sequence    

Annotation

kegg
ID rcu:RCOM_1174510
description transferase, transferring glycosyl groups, putative (EC:2.4.1.34)
nr
ID XP_012088285.1
description PREDICTED: callose synthase 12 [Jatropha curcas]
swissprot
ID Q9ZT82
description Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=2 SV=1
trembl
ID A0A067JX73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25786 PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57579: 102462-109203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_130 0.0 - - PREDICTED: callose synthase 12 [Jatropha curcas]
2 Hb_000497_140 0.0891663775 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
3 Hb_001584_110 0.105330032 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
4 Hb_012055_020 0.1068501396 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
5 Hb_000236_250 0.1095043313 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002874_070 0.1114815016 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
7 Hb_006091_030 0.1115170279 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
8 Hb_011316_110 0.1116850809 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
9 Hb_010436_030 0.1143052007 - - Ribonuclease III, putative [Ricinus communis]
10 Hb_000016_110 0.1144823195 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
11 Hb_004440_100 0.115029448 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
12 Hb_000086_590 0.1159382493 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
13 Hb_011287_090 0.116124259 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
14 Hb_005399_010 0.1189907378 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
15 Hb_109168_010 0.1197327039 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
16 Hb_041091_010 0.1197378443 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
17 Hb_006026_040 0.1199718569 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
18 Hb_123777_030 0.1200308086 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
19 Hb_022288_020 0.121770391 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
20 Hb_022288_010 0.1236141206 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_000077_130 Hb_000077_130 Hb_000497_140 Hb_000497_140 Hb_000077_130--Hb_000497_140 Hb_001584_110 Hb_001584_110 Hb_000077_130--Hb_001584_110 Hb_012055_020 Hb_012055_020 Hb_000077_130--Hb_012055_020 Hb_000236_250 Hb_000236_250 Hb_000077_130--Hb_000236_250 Hb_002874_070 Hb_002874_070 Hb_000077_130--Hb_002874_070 Hb_006091_030 Hb_006091_030 Hb_000077_130--Hb_006091_030 Hb_000016_110 Hb_000016_110 Hb_000497_140--Hb_000016_110 Hb_005399_010 Hb_005399_010 Hb_000497_140--Hb_005399_010 Hb_000497_140--Hb_006091_030 Hb_000106_040 Hb_000106_040 Hb_000497_140--Hb_000106_040 Hb_000086_590 Hb_000086_590 Hb_000497_140--Hb_000086_590 Hb_000230_330 Hb_000230_330 Hb_001584_110--Hb_000230_330 Hb_001584_110--Hb_002874_070 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_000390_060 Hb_000390_060 Hb_001584_110--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_001584_110--Hb_000462_150 Hb_176022_020 Hb_176022_020 Hb_012055_020--Hb_176022_020 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_000230_110 Hb_000230_110 Hb_012055_020--Hb_000230_110 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_000236_250--Hb_001584_110 Hb_000236_250--Hb_014568_030 Hb_005280_010 Hb_005280_010 Hb_000236_250--Hb_005280_010 Hb_002890_340 Hb_002890_340 Hb_000236_250--Hb_002890_340 Hb_185467_020 Hb_185467_020 Hb_000236_250--Hb_185467_020 Hb_001017_040 Hb_001017_040 Hb_000236_250--Hb_001017_040 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_006091_030--Hb_002874_070 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.5239 13.4585 6.45831 14.8006 67.0092 89.4963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2459 11.3907 60.5416 17.8906 14.1081

CAGE analysis