Hb_000106_040

Information

Type -
Description -
Location Contig106: 88391-90436
Sequence    

Annotation

kegg
ID vvi:100854686
description pentatricopeptide repeat-containing protein At4g02750-like
nr
ID XP_010658696.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
swissprot
ID Q9SY02
description Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
trembl
ID F6I5V4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0074g00410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
2 Hb_000206_150 0.0705034011 - - unnamed protein product [Coffea canephora]
3 Hb_000497_140 0.0847779458 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
4 Hb_005399_010 0.0915161184 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
5 Hb_000016_110 0.0958841549 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
6 Hb_000367_290 0.1078736603 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
7 Hb_029866_130 0.1083701137 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
8 Hb_000086_590 0.1105993762 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
9 Hb_012016_020 0.1139783474 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
10 Hb_000152_890 0.1149640508 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
11 Hb_000413_130 0.116551938 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
12 Hb_006091_030 0.1203254907 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
13 Hb_000906_060 0.1207712471 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
14 Hb_000390_070 0.1236798234 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
15 Hb_002341_030 0.1243055524 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
16 Hb_000490_030 0.1253888412 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
17 Hb_004055_040 0.1286811494 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
18 Hb_123777_030 0.1294654577 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
19 Hb_001575_080 0.1296036247 - - PREDICTED: villin-4-like [Jatropha curcas]
20 Hb_011457_110 0.1308049068 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]

Gene co-expression network

sample Hb_000106_040 Hb_000106_040 Hb_000206_150 Hb_000206_150 Hb_000106_040--Hb_000206_150 Hb_000497_140 Hb_000497_140 Hb_000106_040--Hb_000497_140 Hb_005399_010 Hb_005399_010 Hb_000106_040--Hb_005399_010 Hb_000016_110 Hb_000016_110 Hb_000106_040--Hb_000016_110 Hb_000367_290 Hb_000367_290 Hb_000106_040--Hb_000367_290 Hb_029866_130 Hb_029866_130 Hb_000106_040--Hb_029866_130 Hb_000206_150--Hb_005399_010 Hb_000086_590 Hb_000086_590 Hb_000206_150--Hb_000086_590 Hb_000206_150--Hb_000367_290 Hb_000390_070 Hb_000390_070 Hb_000206_150--Hb_000390_070 Hb_000206_150--Hb_000497_140 Hb_000497_140--Hb_000016_110 Hb_000497_140--Hb_005399_010 Hb_006091_030 Hb_006091_030 Hb_000497_140--Hb_006091_030 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130 Hb_000497_140--Hb_000086_590 Hb_005399_010--Hb_000016_110 Hb_012016_020 Hb_012016_020 Hb_005399_010--Hb_012016_020 Hb_001871_040 Hb_001871_040 Hb_005399_010--Hb_001871_040 Hb_001431_070 Hb_001431_070 Hb_005399_010--Hb_001431_070 Hb_000016_110--Hb_006091_030 Hb_022288_010 Hb_022288_010 Hb_000016_110--Hb_022288_010 Hb_041091_010 Hb_041091_010 Hb_000016_110--Hb_041091_010 Hb_000016_110--Hb_012016_020 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_029866_130--Hb_000152_890 Hb_001057_010 Hb_001057_010 Hb_029866_130--Hb_001057_010 Hb_006478_110 Hb_006478_110 Hb_029866_130--Hb_006478_110 Hb_001454_060 Hb_001454_060 Hb_029866_130--Hb_001454_060 Hb_029866_130--Hb_000413_130 Hb_005214_160 Hb_005214_160 Hb_029866_130--Hb_005214_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83499 4.67042 0.639445 1.13671 9.56803 9.2989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65051 2.37226 6.76835 1.83208 1.31827

CAGE analysis