Hb_000413_130

Information

Type -
Description -
Location Contig413: 140595-145075
Sequence    

Annotation

kegg
ID rcu:RCOM_0906720
description hypothetical protein
nr
ID XP_012091434.1
description PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40927: 140459-144972 , PASA_asmbl_40928: 140459-141959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_130 0.0 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
2 Hb_001431_070 0.0661806826 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
3 Hb_005314_010 0.0689005542 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_000367_290 0.0773341134 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
5 Hb_002725_070 0.0813956912 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
6 Hb_029281_010 0.0824639603 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
7 Hb_006091_030 0.08277118 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
8 Hb_006478_110 0.0847756314 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
9 Hb_000001_180 0.0851390577 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
10 Hb_000161_030 0.0889919481 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
11 Hb_042083_070 0.0894064396 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_002818_040 0.0905576921 - - tRNA synthetase-related family protein [Populus trichocarpa]
13 Hb_005295_040 0.0918011413 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
14 Hb_002341_030 0.092007165 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
15 Hb_000152_890 0.0928723003 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
16 Hb_001454_060 0.0948467816 - - uncharacterized protein LOC100527252 [Glycine max]
17 Hb_000490_030 0.0951557435 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
18 Hb_002169_010 0.0961900594 - - PREDICTED: la-related protein 6B [Jatropha curcas]
19 Hb_000016_110 0.0979042743 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
20 Hb_117950_020 0.0981603062 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000413_130 Hb_000413_130 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_005314_010 Hb_005314_010 Hb_000413_130--Hb_005314_010 Hb_000367_290 Hb_000367_290 Hb_000413_130--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_000413_130--Hb_002725_070 Hb_029281_010 Hb_029281_010 Hb_000413_130--Hb_029281_010 Hb_006091_030 Hb_006091_030 Hb_000413_130--Hb_006091_030 Hb_001431_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_001431_070--Hb_005295_040 Hb_117950_020 Hb_117950_020 Hb_001431_070--Hb_117950_020 Hb_001439_180 Hb_001439_180 Hb_001431_070--Hb_001439_180 Hb_001431_070--Hb_000367_290 Hb_000001_180 Hb_000001_180 Hb_005314_010--Hb_000001_180 Hb_002818_040 Hb_002818_040 Hb_005314_010--Hb_002818_040 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005914_230 Hb_005914_230 Hb_005314_010--Hb_005914_230 Hb_005314_010--Hb_029281_010 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002820_040 Hb_002820_040 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_002725_070--Hb_117950_020 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_029281_010--Hb_001439_180 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
220.296 122.082 24.5996 25.1904 315.065 278.809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.493 60.5468 167.25 71.7638 23.1907

CAGE analysis