Hb_024399_010

Information

Type -
Description -
Location Contig24399: 3659-7549
Sequence    

Annotation

kegg
ID rcu:RCOM_1323920
description hypothetical protein
nr
ID XP_012090945.1
description PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JG98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00585 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)
PASA_asmbl_25457: 3518-7573
cDNA
(Sanger)
(ID:Location)
002_B04.ab1: 3593-7412 , 004_O10.ab1: 3620-7412

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024399_010 0.0 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
2 Hb_005314_010 0.0737205206 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_005725_070 0.0899020247 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000481_010 0.0917517358 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
5 Hb_011930_010 0.0921404402 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
6 Hb_002818_040 0.0974384973 - - tRNA synthetase-related family protein [Populus trichocarpa]
7 Hb_000340_510 0.1013617047 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
8 Hb_029281_010 0.1017643771 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
9 Hb_004324_280 0.1041101668 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
10 Hb_002149_040 0.1063178676 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015401_020 0.1073240965 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_000152_890 0.1080790782 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
13 Hb_000001_180 0.1096288986 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
14 Hb_002026_110 0.1099944395 - - protein binding protein, putative [Ricinus communis]
15 Hb_000926_270 0.1118307404 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
16 Hb_000692_260 0.1123492177 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
17 Hb_000490_030 0.1133058551 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
18 Hb_001498_030 0.1133379101 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
19 Hb_005147_110 0.1135709124 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
20 Hb_002783_230 0.1137108966 - - neutral/alkaline invertase [Manihot esculenta]

Gene co-expression network

sample Hb_024399_010 Hb_024399_010 Hb_005314_010 Hb_005314_010 Hb_024399_010--Hb_005314_010 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_011930_010 Hb_011930_010 Hb_024399_010--Hb_011930_010 Hb_002818_040 Hb_002818_040 Hb_024399_010--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_024399_010--Hb_000340_510 Hb_000001_180 Hb_000001_180 Hb_005314_010--Hb_000001_180 Hb_005314_010--Hb_002818_040 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_005914_230 Hb_005914_230 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010 Hb_012977_010 Hb_012977_010 Hb_005725_070--Hb_012977_010 Hb_001498_030 Hb_001498_030 Hb_005725_070--Hb_001498_030 Hb_002025_140 Hb_002025_140 Hb_005725_070--Hb_002025_140 Hb_005725_070--Hb_002818_040 Hb_005725_070--Hb_005314_010 Hb_000481_010--Hb_000340_510 Hb_000784_090 Hb_000784_090 Hb_000481_010--Hb_000784_090 Hb_002249_140 Hb_002249_140 Hb_000481_010--Hb_002249_140 Hb_002026_110 Hb_002026_110 Hb_000481_010--Hb_002026_110 Hb_000481_010--Hb_002818_040 Hb_002631_050 Hb_002631_050 Hb_000481_010--Hb_002631_050 Hb_005147_110 Hb_005147_110 Hb_011930_010--Hb_005147_110 Hb_011609_030 Hb_011609_030 Hb_011930_010--Hb_011609_030 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_000714_020 Hb_000714_020 Hb_011930_010--Hb_000714_020 Hb_005333_020 Hb_005333_020 Hb_011930_010--Hb_005333_020 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_000001_180 Hb_002818_040--Hb_005914_230 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
392.503 152.443 33.1771 43.483 366.47 255.217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
136.727 141.629 194.087 52.4073 11.7172

CAGE analysis