Hb_005333_020

Information

Type -
Description -
Location Contig5333: 13401-16571
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10390g
description POPTRDRAFT_643847; copper-binding family protein
nr
ID XP_012067967.1
description PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
swissprot
ID P93009
description Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1
trembl
ID A0A067L2J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15865 PE=4 SV=1
Gene Ontology
ID GO:0005507
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47457: 13413-16544
cDNA
(Sanger)
(ID:Location)		 010_O12.ab1: 13438-16396 , 014_A03.ab1: 13440-16439 , 016_C18.ab1: 13440-16401 , 032_E13.ab1: 13440-16453 , 035_B20.ab1: 13440-16426

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_020 0.0 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
2 Hb_153150_010 0.0719874534 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
3 Hb_000465_310 0.0819129519 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005147_110 0.0860891323 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
5 Hb_001975_070 0.0950288315 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
6 Hb_011930_010 0.099186827 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
7 Hb_000640_210 0.0996945617 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
8 Hb_008725_250 0.1003149563 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_005144_040 0.1008713582 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
10 Hb_010298_020 0.1013258671 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
11 Hb_006588_090 0.1022216166 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
12 Hb_005701_040 0.1030955174 - - cellular nucleic acid binding protein, putative [Ricinus communis]
13 Hb_005725_070 0.1034957481 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001009_050 0.1046019901 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
15 Hb_000322_170 0.1051432702 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
16 Hb_000373_270 0.1057236777 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_001663_110 0.1062133284 - - RNA binding protein, putative [Ricinus communis]
18 Hb_005314_010 0.1062952371 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_007416_200 0.1084187355 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
20 Hb_000029_160 0.1086521949 - - Nitrilase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005333_020 Hb_005333_020 Hb_153150_010 Hb_153150_010 Hb_005333_020--Hb_153150_010 Hb_000465_310 Hb_000465_310 Hb_005333_020--Hb_000465_310 Hb_005147_110 Hb_005147_110 Hb_005333_020--Hb_005147_110 Hb_001975_070 Hb_001975_070 Hb_005333_020--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_005333_020--Hb_011930_010 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210 Hb_153150_010--Hb_005147_110 Hb_005314_010 Hb_005314_010 Hb_153150_010--Hb_005314_010 Hb_008725_250 Hb_008725_250 Hb_153150_010--Hb_008725_250 Hb_000029_160 Hb_000029_160 Hb_153150_010--Hb_000029_160 Hb_153150_010--Hb_000465_310 Hb_006588_090 Hb_006588_090 Hb_000465_310--Hb_006588_090 Hb_000174_200 Hb_000174_200 Hb_000465_310--Hb_000174_200 Hb_005144_040 Hb_005144_040 Hb_000465_310--Hb_005144_040 Hb_003878_140 Hb_003878_140 Hb_000465_310--Hb_003878_140 Hb_002977_010 Hb_002977_010 Hb_000465_310--Hb_002977_010 Hb_005147_110--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005147_110--Hb_004310_060 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_001975_070--Hb_005147_110 Hb_001009_050 Hb_001009_050 Hb_001975_070--Hb_001009_050 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001975_070--Hb_001341_030 Hb_001975_070--Hb_000373_270 Hb_011930_010--Hb_005147_110 Hb_024399_010 Hb_024399_010 Hb_011930_010--Hb_024399_010 Hb_011609_030 Hb_011609_030 Hb_011930_010--Hb_011609_030 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_000714_020 Hb_000714_020 Hb_011930_010--Hb_000714_020 Hb_000322_170 Hb_000322_170 Hb_000640_210--Hb_000322_170 Hb_000076_290 Hb_000076_290 Hb_000640_210--Hb_000076_290 Hb_000640_210--Hb_000174_200 Hb_005028_010 Hb_005028_010 Hb_000640_210--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_000640_210--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_000640_210--Hb_001178_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1151.48 542.671 160.636 125.048 846.089 769.175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
550.333 382.097 272.318 143.225 57.7763

CAGE analysis