Hb_000640_210

Information

Type -
Description -
Location Contig640: 180001-181867
Sequence    

Annotation

kegg
ID rcu:RCOM_1346580
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP28274.1
description hypothetical protein JCGZ_14045 [Jatropha curcas]
swissprot
ID Q9FZ24
description Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1
trembl
ID A0A067K8Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52109: 180010-181238 , PASA_asmbl_52110: 181246-181487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_210 0.0 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
2 Hb_000322_170 0.0702605131 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
3 Hb_000076_290 0.0704622985 - - translation factor sui1, putative [Ricinus communis]
4 Hb_000174_200 0.0741482761 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
5 Hb_005028_010 0.0756635142 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
6 Hb_012760_200 0.0784132592 - - protein phsophatase-2a, putative [Ricinus communis]
7 Hb_001178_060 0.0840725709 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
8 Hb_004032_350 0.085507693 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
9 Hb_005144_040 0.0860872135 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
10 Hb_001227_110 0.0888492148 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
11 Hb_001348_140 0.0905068153 - - conserved hypothetical protein [Ricinus communis]
12 Hb_025048_040 0.0944228056 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
13 Hb_001259_030 0.0946247325 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
14 Hb_060437_010 0.0946700236 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
15 Hb_002025_140 0.0968044597 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_003216_110 0.0987438388 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
17 Hb_005333_020 0.0996945617 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
18 Hb_001498_030 0.1005234985 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
19 Hb_001034_020 0.1031235849 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
20 Hb_000732_020 0.1038081195 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000640_210 Hb_000640_210 Hb_000322_170 Hb_000322_170 Hb_000640_210--Hb_000322_170 Hb_000076_290 Hb_000076_290 Hb_000640_210--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000640_210--Hb_000174_200 Hb_005028_010 Hb_005028_010 Hb_000640_210--Hb_005028_010 Hb_012760_200 Hb_012760_200 Hb_000640_210--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_000640_210--Hb_001178_060 Hb_000322_170--Hb_001178_060 Hb_005016_030 Hb_005016_030 Hb_000322_170--Hb_005016_030 Hb_004032_350 Hb_004032_350 Hb_000322_170--Hb_004032_350 Hb_000322_170--Hb_000076_290 Hb_000322_170--Hb_000174_200 Hb_000076_290--Hb_000174_200 Hb_000076_290--Hb_004032_350 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_000174_200--Hb_004032_350 Hb_000174_200--Hb_015401_020 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_005028_010--Hb_012760_200 Hb_000212_280 Hb_000212_280 Hb_005028_010--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_005028_010--Hb_000573_040 Hb_025048_040 Hb_025048_040 Hb_005028_010--Hb_025048_040 Hb_001140_080 Hb_001140_080 Hb_005028_010--Hb_001140_080 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_012760_200--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_012760_200--Hb_000331_480 Hb_001178_060--Hb_005016_030 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.1613 22.8457 4.21532 6.35503 40.9845 47.5242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6909 8.7222 11.9852 6.39691 2.007

CAGE analysis