Hb_000212_280

Information

Type -
Description -
Location Contig212: 303655-311148
Sequence    

Annotation

kegg
ID gmx:100777711
description putative RNA-binding protein Luc7-like 2-like
nr
ID XP_012470549.1
description PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
swissprot
ID Q9NQ29
description Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1
trembl
ID A0A0D2NYD2
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G086100 PE=4 SV=1
Gene Ontology
ID GO:0005685
description rna-binding protein luc7-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21961: 303696-311178 , PASA_asmbl_21962: 303934-304408 , PASA_asmbl_21964: 309268-309412 , PASA_asmbl_21965: 309636-309847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_280 0.0 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
2 Hb_025048_040 0.0610601833 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
3 Hb_113216_010 0.063784581 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_002374_150 0.0709900015 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
5 Hb_000331_480 0.0727249832 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
6 Hb_005000_270 0.0748829742 - - unnamed protein product [Vitis vinifera]
7 Hb_005028_010 0.075568458 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
8 Hb_000573_040 0.0758014787 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
9 Hb_012760_200 0.0760432073 - - protein phsophatase-2a, putative [Ricinus communis]
10 Hb_001582_030 0.0767792816 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
11 Hb_174865_050 0.0807286277 - - PREDICTED: neuroguidin [Jatropha curcas]
12 Hb_002918_070 0.0833777388 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
13 Hb_000318_140 0.0840373532 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
14 Hb_002986_050 0.0852455948 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_000134_360 0.0874944284 - - PREDICTED: protein gar2 [Jatropha curcas]
16 Hb_004032_350 0.0876241789 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
17 Hb_001486_120 0.088757096 - - PREDICTED: importin-5-like [Jatropha curcas]
18 Hb_000805_310 0.0890181794 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
19 Hb_002675_190 0.0899005363 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_009615_110 0.0901510618 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000212_280 Hb_000212_280 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_025048_040--Hb_000331_480 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_012760_200 Hb_012760_200 Hb_025048_040--Hb_012760_200 Hb_025048_040--Hb_005028_010 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050 Hb_000016_180 Hb_000016_180 Hb_113216_010--Hb_000016_180 Hb_002837_070 Hb_002837_070 Hb_113216_010--Hb_002837_070 Hb_000185_090 Hb_000185_090 Hb_113216_010--Hb_000185_090 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_000608_340 Hb_000608_340 Hb_002374_150--Hb_000608_340 Hb_001486_120 Hb_001486_120 Hb_002374_150--Hb_001486_120 Hb_002374_150--Hb_012760_200 Hb_000573_040 Hb_000573_040 Hb_002374_150--Hb_000573_040 Hb_001582_030 Hb_001582_030 Hb_002374_150--Hb_001582_030 Hb_001034_020 Hb_001034_020 Hb_000331_480--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_000134_360 Hb_000134_360 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_005028_010--Hb_012760_200 Hb_000640_210 Hb_000640_210 Hb_005028_010--Hb_000640_210 Hb_005028_010--Hb_000573_040 Hb_001140_080 Hb_001140_080 Hb_005028_010--Hb_001140_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
280.015 92.8086 30.8206 25.7685 285.264 385.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.796 50.3116 77.5446 72.568 19.8044

CAGE analysis