Hb_174865_050

Information

Type -
Description -
Location Contig174865: 42805-46524
Sequence    

Annotation

kegg
ID rcu:RCOM_0482870
description something about silencing protein sas10, putative
nr
ID XP_012068053.1
description PREDICTED: neuroguidin [Jatropha curcas]
swissprot
ID Q28IV8
description Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1
trembl
ID A0A067LAG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15907 PE=4 SV=1
Gene Ontology
ID GO:0005622
description neuroguidin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16640: 42760-46462 , PASA_asmbl_16642: 34606-46462
cDNA
(Sanger)
(ID:Location)		 044_I15.ab1: 44233-46462

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174865_050 0.0 - - PREDICTED: neuroguidin [Jatropha curcas]
2 Hb_000212_280 0.0807286277 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
3 Hb_000573_040 0.0842034628 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
4 Hb_113216_010 0.0845249849 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
5 Hb_003666_050 0.0855209797 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
6 Hb_001195_030 0.0863024046 - - auxilin, putative [Ricinus communis]
7 Hb_000185_090 0.0890051064 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
8 Hb_002837_070 0.0895027879 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
9 Hb_022288_010 0.0918635577 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
10 Hb_000134_360 0.0919405214 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_005000_270 0.0930756026 - - unnamed protein product [Vitis vinifera]
12 Hb_019871_020 0.0931922313 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
13 Hb_002918_070 0.093337109 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
14 Hb_000211_090 0.0953992496 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
15 Hb_000684_180 0.0962761837 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
16 Hb_004531_090 0.0983035726 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
17 Hb_006478_070 0.0986342421 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
18 Hb_012807_120 0.0986689661 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_000035_400 0.0992080227 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
20 Hb_000372_040 0.100793262 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_174865_050 Hb_174865_050 Hb_000212_280 Hb_000212_280 Hb_174865_050--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_174865_050--Hb_000573_040 Hb_113216_010 Hb_113216_010 Hb_174865_050--Hb_113216_010 Hb_003666_050 Hb_003666_050 Hb_174865_050--Hb_003666_050 Hb_001195_030 Hb_001195_030 Hb_174865_050--Hb_001195_030 Hb_000185_090 Hb_000185_090 Hb_174865_050--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_002025_140 Hb_002025_140 Hb_000573_040--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000573_040--Hb_000212_280 Hb_000573_040--Hb_005028_010 Hb_004531_090 Hb_004531_090 Hb_000573_040--Hb_004531_090 Hb_000016_180 Hb_000016_180 Hb_113216_010--Hb_000016_180 Hb_002837_070 Hb_002837_070 Hb_113216_010--Hb_002837_070 Hb_113216_010--Hb_000185_090 Hb_113216_010--Hb_025048_040 Hb_003666_050--Hb_001195_030 Hb_000608_340 Hb_000608_340 Hb_003666_050--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_003666_050--Hb_000211_090 Hb_000181_310 Hb_000181_310 Hb_003666_050--Hb_000181_310 Hb_003666_050--Hb_000185_090 Hb_000540_140 Hb_000540_140 Hb_001195_030--Hb_000540_140 Hb_001195_030--Hb_000684_180 Hb_011644_020 Hb_011644_020 Hb_001195_030--Hb_011644_020 Hb_025557_020 Hb_025557_020 Hb_001195_030--Hb_025557_020 Hb_000185_090--Hb_000211_090 Hb_000779_040 Hb_000779_040 Hb_000185_090--Hb_000779_040 Hb_000185_090--Hb_000016_180 Hb_019871_020 Hb_019871_020 Hb_000185_090--Hb_019871_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
363.044 56.7761 34.5076 27.0058 394.72 492.857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.821 64.8638 93.7082 72.0346 45.0953

CAGE analysis