Hb_000540_140

Information

Type -
Description -
Location Contig540: 158331-163018
Sequence    

Annotation

kegg
ID rcu:RCOM_0327490
description zinc binding dehydrogenase, putative (EC:1.3.1.38)
nr
ID XP_002530235.1
description zinc binding dehydrogenase, putative [Ricinus communis]
swissprot
ID Q8LCU7
description Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=2 SV=1
trembl
ID B9SW66
description Zinc binding dehydrogenase, putative OS=Ricinus communis GN=RCOM_0327490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable trans-2-enoyl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47821: 158316-158980 , PASA_asmbl_47822: 159389-162879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_140 0.0 - - zinc binding dehydrogenase, putative [Ricinus communis]
2 Hb_001195_030 0.0855340253 - - auxilin, putative [Ricinus communis]
3 Hb_011644_020 0.0857180992 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
4 Hb_000181_310 0.0877112426 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
5 Hb_025557_020 0.0915831367 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
6 Hb_007305_010 0.0974213156 - - PREDICTED: girdin-like [Jatropha curcas]
7 Hb_003006_060 0.0980737323 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
8 Hb_008143_030 0.1015055987 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
9 Hb_007757_100 0.1029534915 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
10 Hb_002942_080 0.108422013 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
11 Hb_000631_150 0.1092464889 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
12 Hb_001584_290 0.1146290365 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
13 Hb_001226_180 0.1147568629 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
14 Hb_000281_100 0.1148636949 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
15 Hb_000236_280 0.1152013436 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
16 Hb_000318_140 0.1154322889 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
17 Hb_003666_050 0.1154345268 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
18 Hb_001846_060 0.1155752169 - - hypothetical protein RCOM_0992860 [Ricinus communis]
19 Hb_000345_530 0.1159436746 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
20 Hb_000684_180 0.1161387859 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_140 Hb_000540_140 Hb_001195_030 Hb_001195_030 Hb_000540_140--Hb_001195_030 Hb_011644_020 Hb_011644_020 Hb_000540_140--Hb_011644_020 Hb_000181_310 Hb_000181_310 Hb_000540_140--Hb_000181_310 Hb_025557_020 Hb_025557_020 Hb_000540_140--Hb_025557_020 Hb_007305_010 Hb_007305_010 Hb_000540_140--Hb_007305_010 Hb_003006_060 Hb_003006_060 Hb_000540_140--Hb_003006_060 Hb_003666_050 Hb_003666_050 Hb_001195_030--Hb_003666_050 Hb_000684_180 Hb_000684_180 Hb_001195_030--Hb_000684_180 Hb_174865_050 Hb_174865_050 Hb_001195_030--Hb_174865_050 Hb_001195_030--Hb_011644_020 Hb_001195_030--Hb_025557_020 Hb_079326_010 Hb_079326_010 Hb_011644_020--Hb_079326_010 Hb_011644_020--Hb_000684_180 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_007757_100 Hb_007757_100 Hb_000181_310--Hb_007757_100 Hb_000181_310--Hb_003666_050 Hb_003580_040 Hb_003580_040 Hb_000181_310--Hb_003580_040 Hb_004143_070 Hb_004143_070 Hb_000181_310--Hb_004143_070 Hb_009913_050 Hb_009913_050 Hb_000181_310--Hb_009913_050 Hb_000318_140 Hb_000318_140 Hb_025557_020--Hb_000318_140 Hb_164010_020 Hb_164010_020 Hb_025557_020--Hb_164010_020 Hb_000631_150 Hb_000631_150 Hb_025557_020--Hb_000631_150 Hb_018663_020 Hb_018663_020 Hb_025557_020--Hb_018663_020 Hb_000116_170 Hb_000116_170 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180 Hb_007305_010--Hb_001226_180 Hb_003125_060 Hb_003125_060 Hb_007305_010--Hb_003125_060 Hb_033594_020 Hb_033594_020 Hb_007305_010--Hb_033594_020 Hb_000236_280 Hb_000236_280 Hb_007305_010--Hb_000236_280 Hb_000025_750 Hb_000025_750 Hb_007305_010--Hb_000025_750 Hb_000104_080 Hb_000104_080 Hb_007305_010--Hb_000104_080 Hb_002942_080 Hb_002942_080 Hb_003006_060--Hb_002942_080 Hb_004678_060 Hb_004678_060 Hb_003006_060--Hb_004678_060 Hb_003006_060--Hb_000104_080 Hb_010423_020 Hb_010423_020 Hb_003006_060--Hb_010423_020 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_009265_080 Hb_009265_080 Hb_003006_060--Hb_009265_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9012 4.27854 6.94006 3.92029 36.1752 25.4844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7341 6.40743 8.05042 7.72593 7.33068

CAGE analysis