Hb_001226_180

Information

Type -
Description -
Location Contig1226: 245130-253419
Sequence    

Annotation

kegg
ID rcu:RCOM_0706290
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_002516096.1
description peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
swissprot
ID Q6Q152
description Peptidyl-prolyl cis-trans isomerase CYP57 OS=Arabidopsis thaliana GN=CYP57 PE=1 SV=1
trembl
ID B9RQS7
description Peptidyl-prolyl cis-trans isomerase, putative OS=Ricinus communis GN=RCOM_0706290 PE=4 SV=1
Gene Ontology
ID GO:0005622
description peptidyl-prolyl cis-trans

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06875: 245370-253382 , PASA_asmbl_06879: 252614-253101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_180 0.0 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
2 Hb_018663_020 0.0631947553 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
3 Hb_002400_180 0.0671835368 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004678_060 0.0676720901 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
5 Hb_003656_160 0.0721676945 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
6 Hb_001969_040 0.0737399435 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
7 Hb_004310_060 0.0742138061 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_002007_350 0.0743455541 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
9 Hb_007305_010 0.0773595139 - - PREDICTED: girdin-like [Jatropha curcas]
10 Hb_001975_020 0.0780058744 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
11 Hb_025557_020 0.0780200783 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
12 Hb_031754_010 0.0801777219 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
13 Hb_005914_230 0.0807911859 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
14 Hb_000631_150 0.0822418037 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
15 Hb_000327_310 0.0828536241 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
16 Hb_002942_220 0.0839511923 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
17 Hb_007590_080 0.0840460986 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
18 Hb_001366_040 0.0841780098 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
19 Hb_000318_140 0.0850186753 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
20 Hb_000236_320 0.085034425 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001226_180 Hb_001226_180 Hb_018663_020 Hb_018663_020 Hb_001226_180--Hb_018663_020 Hb_002400_180 Hb_002400_180 Hb_001226_180--Hb_002400_180 Hb_004678_060 Hb_004678_060 Hb_001226_180--Hb_004678_060 Hb_003656_160 Hb_003656_160 Hb_001226_180--Hb_003656_160 Hb_001969_040 Hb_001969_040 Hb_001226_180--Hb_001969_040 Hb_004310_060 Hb_004310_060 Hb_001226_180--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_004678_060--Hb_003656_160 Hb_009265_080 Hb_009265_080 Hb_004678_060--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_004678_060--Hb_008253_010 Hb_002007_350 Hb_002007_350 Hb_004678_060--Hb_002007_350 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_003656_160--Hb_002007_350 Hb_003656_160--Hb_002400_180 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_001969_040--Hb_003384_030 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040 Hb_005147_110 Hb_005147_110 Hb_004310_060--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_008725_250 Hb_008725_250 Hb_004310_060--Hb_008725_250 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.504 35.7645 20.6916 16.9203 91.8034 80.3919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.3379 22.8965 33.8833 26.521 16.1266

CAGE analysis