Hb_018663_020

Information

Type -
Description -
Location Contig18663: 48984-56212
Sequence    

Annotation

kegg
ID rcu:RCOM_1075930
description hypothetical protein
nr
ID XP_012078811.1
description PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
swissprot
ID Q9CAF4
description Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana GN=NUP1 PE=1 SV=1
trembl
ID A0A067KBM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13348 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18440: 49020-56195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018663_020 0.0 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
2 Hb_005914_230 0.0572970691 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
3 Hb_003384_030 0.0612432008 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
4 Hb_001226_180 0.0631947553 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
5 Hb_001969_040 0.0634639373 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
6 Hb_000318_140 0.0637448073 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
7 Hb_001009_050 0.0648448082 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
8 Hb_005147_110 0.0669507708 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
9 Hb_004310_060 0.0676858531 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000462_150 0.069039445 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
11 Hb_000236_320 0.0694636221 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
12 Hb_025557_020 0.0774322614 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
13 Hb_001623_550 0.078251479 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
14 Hb_001341_030 0.0784295123 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
15 Hb_000186_280 0.0797915433 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
16 Hb_000001_180 0.0808373837 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
17 Hb_002169_010 0.08230397 - - PREDICTED: la-related protein 6B [Jatropha curcas]
18 Hb_012305_070 0.082361827 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002725_070 0.0836345429 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
20 Hb_002820_040 0.0840696613 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_018663_020 Hb_018663_020 Hb_005914_230 Hb_005914_230 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_001969_040 Hb_001969_040 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_005914_230--Hb_003384_030 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005914_230--Hb_004310_060 Hb_000001_180 Hb_000001_180 Hb_005914_230--Hb_000001_180 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_003384_030--Hb_000001_180 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_003384_030--Hb_002818_040 Hb_003384_030--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_001226_180--Hb_002400_180 Hb_004678_060 Hb_004678_060 Hb_001226_180--Hb_004678_060 Hb_003656_160 Hb_003656_160 Hb_001226_180--Hb_003656_160 Hb_001226_180--Hb_001969_040 Hb_001226_180--Hb_004310_060 Hb_001969_040--Hb_000462_150 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_001969_040--Hb_002818_040 Hb_025557_020 Hb_025557_020 Hb_000318_140--Hb_025557_020 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_000631_150 Hb_000631_150 Hb_000318_140--Hb_000631_150 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110 Hb_000270_450 Hb_000270_450 Hb_001009_050--Hb_000270_450 Hb_001623_550 Hb_001623_550 Hb_001009_050--Hb_001623_550 Hb_001975_070 Hb_001975_070 Hb_001009_050--Hb_001975_070 Hb_025048_040 Hb_025048_040 Hb_001009_050--Hb_025048_040 Hb_001009_050--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.4692 29.8556 16.7764 9.7522 81.8829 89.4905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.8706 26.8186 31.5059 26.0061 9.27343

CAGE analysis