Hb_025048_040

Information

Type -
Description -
Location Contig25048: 11344-17640
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07090g
description POPTRDRAFT_661875; hypothetical protein
nr
ID XP_012080253.1
description PREDICTED: NAP1-related protein 2 [Jatropha curcas]
swissprot
ID Q8LC68
description NAP1-related protein 2 OS=Arabidopsis thaliana GN=NRP2 PE=1 SV=2
trembl
ID A0A067KG78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11616 PE=3 SV=1
Gene Ontology
ID GO:0005634
description nap1-related protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26202: 11874-17550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025048_040 0.0 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
2 Hb_000212_280 0.0610601833 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
3 Hb_000331_480 0.0708577352 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
4 Hb_000270_450 0.075318059 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
5 Hb_012760_200 0.0784825213 - - protein phsophatase-2a, putative [Ricinus communis]
6 Hb_005028_010 0.0791280927 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
7 Hb_001009_050 0.0801359076 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
8 Hb_113216_010 0.0835828423 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
9 Hb_013753_010 0.0881322444 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
10 Hb_001140_080 0.0903661292 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
11 Hb_001227_110 0.090485101 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
12 Hb_000890_220 0.0905331609 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
13 Hb_001034_020 0.0927029915 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
14 Hb_000779_040 0.0932286264 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
15 Hb_000640_210 0.0944228056 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
16 Hb_000076_290 0.0948168377 - - translation factor sui1, putative [Ricinus communis]
17 Hb_004032_350 0.0950013695 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
18 Hb_000322_170 0.0968652755 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
19 Hb_060437_010 0.0992570674 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
20 Hb_000211_090 0.0995478505 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_025048_040 Hb_025048_040 Hb_000212_280 Hb_000212_280 Hb_025048_040--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_025048_040--Hb_000331_480 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_012760_200 Hb_012760_200 Hb_025048_040--Hb_012760_200 Hb_005028_010 Hb_005028_010 Hb_025048_040--Hb_005028_010 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000212_280--Hb_000331_480 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_000212_280--Hb_005028_010 Hb_001034_020 Hb_001034_020 Hb_000331_480--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_000270_450--Hb_001009_050 Hb_001140_080 Hb_001140_080 Hb_000270_450--Hb_001140_080 Hb_009615_110 Hb_009615_110 Hb_000270_450--Hb_009615_110 Hb_005016_030 Hb_005016_030 Hb_000270_450--Hb_005016_030 Hb_000320_440 Hb_000320_440 Hb_000270_450--Hb_000320_440 Hb_012760_200--Hb_005028_010 Hb_004032_350 Hb_004032_350 Hb_012760_200--Hb_004032_350 Hb_012760_200--Hb_001034_020 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_012760_200--Hb_000212_280 Hb_000640_210 Hb_000640_210 Hb_005028_010--Hb_000640_210 Hb_000573_040 Hb_000573_040 Hb_005028_010--Hb_000573_040 Hb_005028_010--Hb_001140_080 Hb_018663_020 Hb_018663_020 Hb_001009_050--Hb_018663_020 Hb_001623_550 Hb_001623_550 Hb_001009_050--Hb_001623_550 Hb_001975_070 Hb_001975_070 Hb_001009_050--Hb_001975_070 Hb_001009_050--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
266.868 80.8224 18.9516 20.8513 221.04 278.306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.4606 48.132 45.9742 63.1198 9.22048

CAGE analysis