Hb_001034_020

Information

Type -
Description -
Location Contig1034: 97965-110554
Sequence    

Annotation

kegg
ID rcu:RCOM_1575880
description yth domain-containing protein, putative
nr
ID XP_012081973.1
description PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
swissprot
ID Q91YT7
description YTH domain-containing family protein 2 OS=Mus musculus GN=Ythdf2 PE=2 SV=1
trembl
ID A0A067K346
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19307 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01335: 98085-102492 , PASA_asmbl_01336: 105134-110173 , PASA_asmbl_01337: 98086-108475 , PASA_asmbl_01338: 108802-110173 , PASA_asmbl_01339: 102185-102507
cDNA
(Sanger)
(ID:Location)		 003_M01.ab1: 98285-99379

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001034_020 0.0 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
2 Hb_060437_010 0.0703818718 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
3 Hb_000331_480 0.0705029946 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
4 Hb_001439_180 0.0724595459 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
5 Hb_012760_200 0.0729190945 - - protein phsophatase-2a, putative [Ricinus communis]
6 Hb_004032_350 0.0740233721 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
7 Hb_002675_190 0.0769217481 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000076_290 0.0805837478 - - translation factor sui1, putative [Ricinus communis]
9 Hb_004531_090 0.0836559185 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
10 Hb_000573_040 0.0839230074 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
11 Hb_160818_010 0.08804088 - - -
12 Hb_002025_140 0.0924886839 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_013753_010 0.0925175556 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
14 Hb_025048_040 0.0927029915 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
15 Hb_000367_290 0.0931031184 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
16 Hb_005028_010 0.0933540568 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
17 Hb_000088_180 0.0944376601 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
18 Hb_000212_280 0.0946432408 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
19 Hb_004931_040 0.0957221237 - - splicing factor-related family protein [Populus trichocarpa]
20 Hb_113216_010 0.096007414 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_001034_020 Hb_001034_020 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_000331_480 Hb_000331_480 Hb_001034_020--Hb_000331_480 Hb_001439_180 Hb_001439_180 Hb_001034_020--Hb_001439_180 Hb_012760_200 Hb_012760_200 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350 Hb_002675_190 Hb_002675_190 Hb_001034_020--Hb_002675_190 Hb_003050_090 Hb_003050_090 Hb_060437_010--Hb_003050_090 Hb_060437_010--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_060437_010--Hb_001178_060 Hb_000025_750 Hb_000025_750 Hb_060437_010--Hb_000025_750 Hb_000640_210 Hb_000640_210 Hb_060437_010--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_000331_480--Hb_025048_040 Hb_000331_480--Hb_002675_190 Hb_000212_280 Hb_000212_280 Hb_000331_480--Hb_000212_280 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_012760_200--Hb_000212_280 Hb_004032_350--Hb_000076_290 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_004032_350--Hb_013753_010 Hb_002675_190--Hb_004931_040 Hb_003734_130 Hb_003734_130 Hb_002675_190--Hb_003734_130 Hb_002675_190--Hb_000212_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
510.206 144.881 21.7576 32.3335 441.044 449.141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
135.579 72.0309 162.535 79.2244 31.0638

CAGE analysis