Hb_000025_750

Information

Type -
Description -
Location Contig25: 705142-709560
Sequence    

Annotation

kegg
ID rcu:RCOM_1282630
description Coiled-coil domain-containing protein, putative
nr
ID XP_012075050.1
description PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
swissprot
ID Q9H0G5
description Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens GN=NSRP1 PE=1 SV=1
trembl
ID A0A067KH73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26174: 705163-709421 , PASA_asmbl_26175: 705758-706125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_750 0.0 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
2 Hb_001227_110 0.0589129509 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
3 Hb_000849_150 0.0690386971 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
4 Hb_001408_090 0.0743663832 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
5 Hb_000692_170 0.0869493094 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
6 Hb_000093_130 0.0880181456 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_002025_140 0.0903534752 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_060437_010 0.0906035199 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
9 Hb_007305_010 0.0948859394 - - PREDICTED: girdin-like [Jatropha curcas]
10 Hb_000613_020 0.0964523685 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
11 Hb_005725_070 0.0981688206 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004032_460 0.1035495575 - - -
13 Hb_001348_140 0.1038993583 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004531_090 0.1046830783 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
15 Hb_000640_210 0.1061659647 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
16 Hb_003216_110 0.1063389566 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
17 Hb_001498_030 0.1069670387 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
18 Hb_000035_400 0.1079989139 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
19 Hb_025048_040 0.1086121834 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
20 Hb_000173_370 0.1096485205 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_750 Hb_000025_750 Hb_001227_110 Hb_001227_110 Hb_000025_750--Hb_001227_110 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_001408_090 Hb_001408_090 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000093_130 Hb_000093_130 Hb_000025_750--Hb_000093_130 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000016_280 Hb_000016_280 Hb_001227_110--Hb_000016_280 Hb_001227_110--Hb_000093_130 Hb_001227_110--Hb_001408_090 Hb_000640_210 Hb_000640_210 Hb_001227_110--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_001227_110--Hb_025048_040 Hb_004032_460 Hb_004032_460 Hb_000849_150--Hb_004032_460 Hb_060437_010 Hb_060437_010 Hb_000849_150--Hb_060437_010 Hb_000849_150--Hb_001408_090 Hb_002897_040 Hb_002897_040 Hb_000849_150--Hb_002897_040 Hb_005725_070 Hb_005725_070 Hb_000849_150--Hb_005725_070 Hb_003216_110 Hb_003216_110 Hb_001408_090--Hb_003216_110 Hb_001408_090--Hb_002025_140 Hb_000331_480 Hb_000331_480 Hb_001408_090--Hb_000331_480 Hb_001498_030 Hb_001498_030 Hb_001408_090--Hb_001498_030 Hb_000692_170--Hb_060437_010 Hb_000692_170--Hb_005725_070 Hb_000692_170--Hb_001227_110 Hb_000692_170--Hb_000093_130 Hb_002728_020 Hb_002728_020 Hb_000692_170--Hb_002728_020 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_007416_200 Hb_007416_200 Hb_000093_130--Hb_007416_200 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_000573_040 Hb_000573_040 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
267.81 62.077 38.8958 17.3807 199.626 171.603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.5556 37.5113 36.8491 33.109 14.933

CAGE analysis