Hb_000093_130

Information

Type -
Description -
Location Contig93: 164851-166922
Sequence    

Annotation

kegg
ID rcu:RCOM_1620220
description glycine-rich RNA-binding protein, putative
nr
ID XP_002512060.1
description glycine-rich RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9QZH3
description Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2
trembl
ID B9REC1
description Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1620220 PE=4 SV=1
Gene Ontology
ID GO:0000166
description peptidyl-prolyl cis-trans isomerase e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62819: 164819-166909
cDNA
(Sanger)
(ID:Location)		 012_H17.ab1: 165040-166807

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_130 0.0 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
2 Hb_001227_110 0.0748427074 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
3 Hb_000116_570 0.0794803543 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
4 Hb_001473_190 0.080530213 - - 50S ribosomal protein L20 [Hevea brasiliensis]
5 Hb_000025_750 0.0880181456 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
6 Hb_007416_200 0.088503429 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
7 Hb_074683_020 0.0919056092 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
8 Hb_000684_300 0.1001582213 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
9 Hb_000016_280 0.1028166188 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
10 Hb_000692_170 0.1045765304 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
11 Hb_003813_200 0.1063874806 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_000264_060 0.1106305237 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
13 Hb_000322_170 0.1116499865 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
14 Hb_001474_030 0.1121569185 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_060437_010 0.1159653683 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
16 Hb_000849_150 0.1178292547 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
17 Hb_005333_020 0.1189304212 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
18 Hb_001633_100 0.1207867216 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
19 Hb_000640_210 0.1218659913 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
20 Hb_101151_020 0.1243921068 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000093_130 Hb_000093_130 Hb_001227_110 Hb_001227_110 Hb_000093_130--Hb_001227_110 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_007416_200 Hb_007416_200 Hb_000093_130--Hb_007416_200 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_001227_110--Hb_000025_750 Hb_000016_280 Hb_000016_280 Hb_001227_110--Hb_000016_280 Hb_001408_090 Hb_001408_090 Hb_001227_110--Hb_001408_090 Hb_000640_210 Hb_000640_210 Hb_001227_110--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_001227_110--Hb_025048_040 Hb_000116_570--Hb_000016_280 Hb_010883_080 Hb_010883_080 Hb_000116_570--Hb_010883_080 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_001473_190--Hb_000116_570 Hb_000684_300 Hb_000684_300 Hb_001473_190--Hb_000684_300 Hb_001703_130 Hb_001703_130 Hb_001473_190--Hb_001703_130 Hb_003813_200 Hb_003813_200 Hb_001473_190--Hb_003813_200 Hb_063409_020 Hb_063409_020 Hb_001473_190--Hb_063409_020 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_007416_200--Hb_003813_200 Hb_007416_200--Hb_000684_300 Hb_005333_020 Hb_005333_020 Hb_007416_200--Hb_005333_020 Hb_001956_050 Hb_001956_050 Hb_007416_200--Hb_001956_050 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090 Hb_000808_060 Hb_000808_060 Hb_074683_020--Hb_000808_060 Hb_000264_060 Hb_000264_060 Hb_074683_020--Hb_000264_060 Hb_003581_110 Hb_003581_110 Hb_074683_020--Hb_003581_110 Hb_074683_020--Hb_001227_110 Hb_074683_020--Hb_007416_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
830.037 324.715 135.826 52.6824 637.249 519.001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
173.336 173.563 95.9267 71.7213 27.4052

CAGE analysis