Hb_063409_020

Information

Type -
Description -
Location Contig63409: 7582-18262
Sequence    

Annotation

kegg
ID rcu:RCOM_1144940
description Calcium-binding protein, putative
nr
ID XP_002531607.1
description Calcium-binding protein, putative [Ricinus communis]
swissprot
ID Q9FGK3
description Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1
trembl
ID B9T038
description Calcium-binding protein, putative OS=Ricinus communis GN=RCOM_1144940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51880: 14533-17232 , PASA_asmbl_51881: 7623-17232 , PASA_asmbl_51882: 10420-10713
cDNA
(Sanger)
(ID:Location)		 035_P23.ab1: 15080-17199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063409_020 0.0 - - Calcium-binding protein, putative [Ricinus communis]
2 Hb_001703_130 0.1155444366 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
3 Hb_000976_080 0.116576607 - - hypothetical protein VITISV_034376 [Vitis vinifera]
4 Hb_001473_190 0.1228615984 - - 50S ribosomal protein L20 [Hevea brasiliensis]
5 Hb_005846_020 0.1229004606 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
6 Hb_001473_080 0.1260551538 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
7 Hb_004920_060 0.1268344825 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
8 Hb_002897_040 0.1291844822 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
9 Hb_005695_060 0.1307451202 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
10 Hb_152453_010 0.1323697415 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
11 Hb_001474_030 0.1324172343 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
12 Hb_012184_050 0.1350848383 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
13 Hb_000116_460 0.1377108103 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
14 Hb_000093_130 0.1378523491 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
15 Hb_000281_010 0.1392335182 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
16 Hb_007757_100 0.140444766 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
17 Hb_001001_020 0.1412778195 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
18 Hb_006631_010 0.1422287598 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
19 Hb_000453_190 0.1426607868 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
20 Hb_000544_120 0.1434776632 - - PREDICTED: thymidylate kinase [Jatropha curcas]

Gene co-expression network

sample Hb_063409_020 Hb_063409_020 Hb_001703_130 Hb_001703_130 Hb_063409_020--Hb_001703_130 Hb_000976_080 Hb_000976_080 Hb_063409_020--Hb_000976_080 Hb_001473_190 Hb_001473_190 Hb_063409_020--Hb_001473_190 Hb_005846_020 Hb_005846_020 Hb_063409_020--Hb_005846_020 Hb_001473_080 Hb_001473_080 Hb_063409_020--Hb_001473_080 Hb_004920_060 Hb_004920_060 Hb_063409_020--Hb_004920_060 Hb_002805_170 Hb_002805_170 Hb_001703_130--Hb_002805_170 Hb_000116_570 Hb_000116_570 Hb_001703_130--Hb_000116_570 Hb_010883_080 Hb_010883_080 Hb_001703_130--Hb_010883_080 Hb_000281_010 Hb_000281_010 Hb_001703_130--Hb_000281_010 Hb_000685_080 Hb_000685_080 Hb_001703_130--Hb_000685_080 Hb_152453_010 Hb_152453_010 Hb_000976_080--Hb_152453_010 Hb_000976_080--Hb_005846_020 Hb_001001_020 Hb_001001_020 Hb_000976_080--Hb_001001_020 Hb_000345_530 Hb_000345_530 Hb_000976_080--Hb_000345_530 Hb_005695_060 Hb_005695_060 Hb_000976_080--Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_000976_080--Hb_002783_120 Hb_000093_130 Hb_000093_130 Hb_001473_190--Hb_000093_130 Hb_001473_190--Hb_000116_570 Hb_000684_300 Hb_000684_300 Hb_001473_190--Hb_000684_300 Hb_001473_190--Hb_001703_130 Hb_003813_200 Hb_003813_200 Hb_001473_190--Hb_003813_200 Hb_005846_020--Hb_152453_010 Hb_005803_010 Hb_005803_010 Hb_005846_020--Hb_005803_010 Hb_000617_220 Hb_000617_220 Hb_005846_020--Hb_000617_220 Hb_005846_020--Hb_005695_060 Hb_003091_010 Hb_003091_010 Hb_005846_020--Hb_003091_010 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_001473_080--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_001473_080--Hb_002675_040 Hb_078477_040 Hb_078477_040 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
290.101 84.8755 122.902 40.224 302.188 211.666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7189 44.8923 35.6158 19.0356 18.8723

CAGE analysis