Hb_000685_080

Information

Type -
Description -
Location Contig685: 80662-85172
Sequence    

Annotation

kegg
ID rcu:RCOM_1692040
description protein binding protein, putative
nr
ID XP_002509962.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8N806
description Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2
trembl
ID B9RCS8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1692040 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase ubr7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54097: 80869-85171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000685_080 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_003125_060 0.073222978 - - PREDICTED: snurportin-1 [Jatropha curcas]
3 Hb_009646_050 0.079506749 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005399_020 0.0800313407 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
5 Hb_000016_280 0.0805378269 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
6 Hb_002977_010 0.0844678442 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
7 Hb_002133_030 0.0867941493 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
8 Hb_000116_280 0.0882452666 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
9 Hb_000116_570 0.0884950047 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
10 Hb_148209_020 0.0900375603 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
11 Hb_001474_030 0.0905950456 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
12 Hb_002612_010 0.0928332682 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
13 Hb_001473_080 0.094079496 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
14 Hb_006829_090 0.0942971179 - - PREDICTED: protein MOS2 [Jatropha curcas]
15 Hb_010883_080 0.0943832962 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
16 Hb_000281_010 0.0948634327 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
17 Hb_000487_100 0.0950050516 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
18 Hb_009178_020 0.095428837 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
19 Hb_033594_020 0.0961951277 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
20 Hb_001946_300 0.0967578104 - - PREDICTED: F-box protein At-B [Jatropha curcas]

Gene co-expression network

sample Hb_000685_080 Hb_000685_080 Hb_003125_060 Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_009646_050 Hb_009646_050 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000016_280 Hb_000016_280 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_003125_060--Hb_002133_030 Hb_027405_020 Hb_027405_020 Hb_003125_060--Hb_027405_020 Hb_000487_100 Hb_000487_100 Hb_003125_060--Hb_000487_100 Hb_023020_060 Hb_023020_060 Hb_003125_060--Hb_023020_060 Hb_007305_010 Hb_007305_010 Hb_003125_060--Hb_007305_010 Hb_009646_050--Hb_002977_010 Hb_000116_570 Hb_000116_570 Hb_009646_050--Hb_000116_570 Hb_000281_010 Hb_000281_010 Hb_009646_050--Hb_000281_010 Hb_010883_080 Hb_010883_080 Hb_009646_050--Hb_010883_080 Hb_009646_050--Hb_000016_280 Hb_000116_280 Hb_000116_280 Hb_005399_020--Hb_000116_280 Hb_012395_160 Hb_012395_160 Hb_005399_020--Hb_012395_160 Hb_005038_020 Hb_005038_020 Hb_005399_020--Hb_005038_020 Hb_000367_290 Hb_000367_290 Hb_005399_020--Hb_000367_290 Hb_148209_020 Hb_148209_020 Hb_005399_020--Hb_148209_020 Hb_000016_280--Hb_000116_570 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_001227_110 Hb_001227_110 Hb_000016_280--Hb_001227_110 Hb_000016_280--Hb_003125_060 Hb_000016_280--Hb_010883_080 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_001616_050 Hb_001616_050 Hb_002977_010--Hb_001616_050 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_002977_010--Hb_148209_020 Hb_002133_030--Hb_023020_060 Hb_001498_030 Hb_001498_030 Hb_002133_030--Hb_001498_030 Hb_004724_360 Hb_004724_360 Hb_002133_030--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_002133_030--Hb_000327_310 Hb_000343_210 Hb_000343_210 Hb_002133_030--Hb_000343_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.953 122.228 48.6865 21.5377 192.988 151.653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.1932 31.1789 49.3034 34.7174 19.4877

CAGE analysis