Hb_101151_020

Information

Type -
Description -
Location Contig101151: 7065-8286
Sequence    

Annotation

kegg
ID rcu:RCOM_0545700
description DNA binding protein, putative
nr
ID XP_002529443.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STX4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0545700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00623: 7847-8063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101151_020 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000016_280 0.0734866779 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
3 Hb_000890_220 0.0767547581 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
4 Hb_013753_010 0.0840758175 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
5 Hb_000779_040 0.0865794564 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
6 Hb_007348_030 0.0865944575 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
7 Hb_012760_200 0.0908829848 - - protein phsophatase-2a, putative [Ricinus communis]
8 Hb_002374_150 0.0911921643 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
9 Hb_001907_060 0.092554573 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
10 Hb_001227_110 0.0953764483 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
11 Hb_004531_090 0.095706033 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
12 Hb_000792_110 0.0965900212 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
13 Hb_004032_350 0.0977248639 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
14 Hb_000608_340 0.0990409843 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
15 Hb_000685_080 0.0994713256 - - protein binding protein, putative [Ricinus communis]
16 Hb_006829_090 0.100844783 - - PREDICTED: protein MOS2 [Jatropha curcas]
17 Hb_000211_090 0.1028986698 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
18 Hb_000116_570 0.1039026181 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
19 Hb_003125_060 0.1043744985 - - PREDICTED: snurportin-1 [Jatropha curcas]
20 Hb_000116_280 0.1044886515 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_101151_020 Hb_101151_020 Hb_000016_280 Hb_000016_280 Hb_101151_020--Hb_000016_280 Hb_000890_220 Hb_000890_220 Hb_101151_020--Hb_000890_220 Hb_013753_010 Hb_013753_010 Hb_101151_020--Hb_013753_010 Hb_000779_040 Hb_000779_040 Hb_101151_020--Hb_000779_040 Hb_007348_030 Hb_007348_030 Hb_101151_020--Hb_007348_030 Hb_012760_200 Hb_012760_200 Hb_101151_020--Hb_012760_200 Hb_000116_570 Hb_000116_570 Hb_000016_280--Hb_000116_570 Hb_001227_110 Hb_001227_110 Hb_000016_280--Hb_001227_110 Hb_000685_080 Hb_000685_080 Hb_000016_280--Hb_000685_080 Hb_003125_060 Hb_003125_060 Hb_000016_280--Hb_003125_060 Hb_010883_080 Hb_010883_080 Hb_000016_280--Hb_010883_080 Hb_000890_220--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_000890_220--Hb_000211_090 Hb_000890_220--Hb_013753_010 Hb_000792_110 Hb_000792_110 Hb_000890_220--Hb_000792_110 Hb_000890_220--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_013753_010--Hb_004032_350 Hb_013753_010--Hb_012760_200 Hb_000331_480 Hb_000331_480 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_000244_240 Hb_000244_240 Hb_007348_030--Hb_000244_240 Hb_000365_060 Hb_000365_060 Hb_007348_030--Hb_000365_060 Hb_000120_510 Hb_000120_510 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_001301_210 Hb_001301_210 Hb_007348_030--Hb_001301_210 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_012760_200--Hb_000331_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28995 1.64489 0.456443 0.313675 3.45114 3.23914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.796715 0.337354 0.526408 0.564344 0.389665

CAGE analysis