Hb_000608_340

Information

Type -
Description -
Location Contig608: 188610-195051
Sequence    

Annotation

kegg
ID rcu:RCOM_1077710
description ATP binding protein, putative
nr
ID XP_011009456.1
description PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
swissprot
ID Q9NQ29
description Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1
trembl
ID A0A0D2RJ87
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G086100 PE=4 SV=1
Gene Ontology
ID GO:0005685
description rna-binding protein luc7-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_340 0.0 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
2 Hb_000779_040 0.0687726218 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
3 Hb_019871_020 0.0737446491 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
4 Hb_002374_150 0.0749660809 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
5 Hb_003666_050 0.0777931628 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
6 Hb_000619_070 0.0822787479 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
7 Hb_035360_010 0.0859652162 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
8 Hb_000211_090 0.0876678377 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
9 Hb_000185_090 0.0882643571 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
10 Hb_000890_220 0.0906999697 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_000792_110 0.0923485803 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
12 Hb_004531_090 0.0925529432 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
13 Hb_001582_030 0.0979029271 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
14 Hb_002918_070 0.0986055915 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
15 Hb_101151_020 0.0990409843 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000212_280 0.1042659142 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
17 Hb_000134_360 0.1049671652 - - PREDICTED: protein gar2 [Jatropha curcas]
18 Hb_003673_020 0.1059550543 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
19 Hb_000573_040 0.1062457428 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
20 Hb_002025_140 0.1074261651 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_340 Hb_000608_340 Hb_000779_040 Hb_000779_040 Hb_000608_340--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010 Hb_000890_220 Hb_000890_220 Hb_000779_040--Hb_000890_220 Hb_000211_090 Hb_000211_090 Hb_000779_040--Hb_000211_090 Hb_000792_110 Hb_000792_110 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_001582_030 Hb_001582_030 Hb_019871_020--Hb_001582_030 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_019871_020--Hb_004531_090 Hb_000185_090 Hb_000185_090 Hb_019871_020--Hb_000185_090 Hb_000940_040 Hb_000940_040 Hb_019871_020--Hb_000940_040 Hb_000212_280 Hb_000212_280 Hb_002374_150--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002374_150--Hb_001486_120 Hb_012760_200 Hb_012760_200 Hb_002374_150--Hb_012760_200 Hb_000573_040 Hb_000573_040 Hb_002374_150--Hb_000573_040 Hb_002374_150--Hb_001582_030 Hb_001195_030 Hb_001195_030 Hb_003666_050--Hb_001195_030 Hb_003666_050--Hb_000211_090 Hb_000181_310 Hb_000181_310 Hb_003666_050--Hb_000181_310 Hb_003666_050--Hb_000185_090 Hb_174865_050 Hb_174865_050 Hb_003666_050--Hb_174865_050 Hb_000619_070--Hb_035360_010 Hb_000619_070--Hb_000779_040 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_000619_070--Hb_019871_020 Hb_035360_010--Hb_003673_020 Hb_035360_010--Hb_000792_110 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000211_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.201 45.8794 17.3337 13.3684 186.026 154.186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.0102 17.7445 21.0957 26.73 12.8666

CAGE analysis