Hb_035360_010

Information

Type -
Description -
Location Contig35360: 3279-8399
Sequence    

Annotation

kegg
ID rcu:RCOM_1749860
description RNA binding protein, putative
nr
ID XP_012085050.1
description PREDICTED: putative G3BP-like protein [Jatropha curcas]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID A0A067JQW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17509 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035360_010 0.0 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
2 Hb_000619_070 0.0527340419 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
3 Hb_003673_020 0.0665430674 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
4 Hb_000792_110 0.0840020232 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
5 Hb_000779_040 0.0840324195 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
6 Hb_000608_340 0.0859652162 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
7 Hb_000211_090 0.092646779 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
8 Hb_000544_120 0.0970834306 - - PREDICTED: thymidylate kinase [Jatropha curcas]
9 Hb_045502_010 0.1000382621 - - prefoldin subunit 1 [Jatropha curcas]
10 Hb_000211_080 0.1007021807 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
11 Hb_000185_090 0.1059803914 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
12 Hb_019871_020 0.1090261033 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
13 Hb_006631_010 0.1107594541 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
14 Hb_000018_160 0.1122091987 - - nitrate transporter, putative [Ricinus communis]
15 Hb_000016_180 0.11289759 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
16 Hb_000173_210 0.1132873913 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
17 Hb_004531_090 0.1149180179 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
18 Hb_003666_050 0.1171430355 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
19 Hb_010189_010 0.1172118726 - - -
20 Hb_000890_220 0.1183915029 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_035360_010 Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_035360_010--Hb_000619_070 Hb_003673_020 Hb_003673_020 Hb_035360_010--Hb_003673_020 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_000779_040 Hb_000779_040 Hb_035360_010--Hb_000779_040 Hb_000608_340 Hb_000608_340 Hb_035360_010--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_035360_010--Hb_000211_090 Hb_000619_070--Hb_000608_340 Hb_000619_070--Hb_000779_040 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_003673_020--Hb_000779_040 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_000792_110--Hb_000211_090 Hb_000792_110--Hb_000779_040 Hb_000890_220 Hb_000890_220 Hb_000792_110--Hb_000890_220 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000211_090 Hb_000779_040--Hb_000608_340 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_000608_340--Hb_003666_050 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000211_090--Hb_000890_220 Hb_000211_090--Hb_003666_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.6604 26.394 14.374 9.92909 153.967 129.996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3024 11.0232 11.8244 13.2072 3.76633

CAGE analysis