Hb_000211_080

Information

Type -
Description -
Location Contig211: 103717-131436
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_220535
description hypothetical protein
nr
ID XP_012075814.1
description PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID P09436
description Isoleucine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILS1 PE=1 SV=1
trembl
ID A0A067KSI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10564 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable isoleucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21837: 103389-140338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000211_080 0.0 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_172256_010 0.0679375297 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_003673_020 0.0832284508 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
4 Hb_000779_040 0.0986641868 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
5 Hb_000792_110 0.0990708418 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
6 Hb_035360_010 0.1007021807 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_000211_090 0.1014030187 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
8 Hb_000016_180 0.1082815078 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
9 Hb_000018_160 0.1095843183 - - nitrate transporter, putative [Ricinus communis]
10 Hb_000890_220 0.1098424957 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_004102_130 0.1153238201 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000185_090 0.1189880492 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
13 Hb_005568_070 0.1212442485 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
14 Hb_000619_070 0.1251457415 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
15 Hb_000161_100 0.1264393116 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_004206_040 0.1302611645 - - cytochrome P450, putative [Ricinus communis]
17 Hb_002918_070 0.1304711085 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
18 Hb_003540_140 0.1341212974 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
19 Hb_000213_060 0.1347850196 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
20 Hb_010189_010 0.1355228702 - - -

Gene co-expression network

sample Hb_000211_080 Hb_000211_080 Hb_172256_010 Hb_172256_010 Hb_000211_080--Hb_172256_010 Hb_003673_020 Hb_003673_020 Hb_000211_080--Hb_003673_020 Hb_000779_040 Hb_000779_040 Hb_000211_080--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_080--Hb_000792_110 Hb_035360_010 Hb_035360_010 Hb_000211_080--Hb_035360_010 Hb_000211_090 Hb_000211_090 Hb_000211_080--Hb_000211_090 Hb_004102_130 Hb_004102_130 Hb_172256_010--Hb_004102_130 Hb_172256_010--Hb_000779_040 Hb_172256_010--Hb_003673_020 Hb_000890_220 Hb_000890_220 Hb_172256_010--Hb_000890_220 Hb_000016_180 Hb_000016_180 Hb_172256_010--Hb_000016_180 Hb_003673_020--Hb_035360_010 Hb_003673_020--Hb_000779_040 Hb_003673_020--Hb_000211_090 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000792_110--Hb_000211_090 Hb_000792_110--Hb_000890_220 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_035360_010--Hb_000619_070 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_035360_010--Hb_000211_090 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000211_090--Hb_000890_220 Hb_000211_090--Hb_003666_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.861 27.6831 6.01019 5.98799 171.672 167.268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8586 5.05291 16.2827 17.9056 9.15951

CAGE analysis