Hb_000120_510

Information

Type -
Description -
Location Contig120: 386499-396891
Sequence    

Annotation

kegg
ID rcu:RCOM_0970060
description transcription initiation factor ia, putative
nr
ID XP_012067215.1
description PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
swissprot
ID B2RS91
description RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1
trembl
ID A0A067LB99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26773 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06144: 386302-396848 , PASA_asmbl_06145: 396018-396735 , PASA_asmbl_06148: 393884-394155 , PASA_asmbl_06149: 394905-395035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_510 0.0 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
2 Hb_001396_290 0.0627782833 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
3 Hb_001301_210 0.0632563262 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
4 Hb_006829_090 0.0687081102 - - PREDICTED: protein MOS2 [Jatropha curcas]
5 Hb_000331_190 0.074122964 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
6 Hb_000343_210 0.0763174298 - - ran-binding protein, putative [Ricinus communis]
7 Hb_000244_240 0.0782616599 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002675_040 0.0834801249 - - ran-binding protein, putative [Ricinus communis]
9 Hb_008725_130 0.0838831311 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
10 Hb_001196_070 0.0850269604 - - nucleolar protein nop56, putative [Ricinus communis]
11 Hb_023020_060 0.0857550112 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
12 Hb_000504_160 0.0859872846 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
13 Hb_002133_030 0.0863759891 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
14 Hb_001278_060 0.0867687694 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_006588_050 0.0868343933 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
16 Hb_033594_020 0.0874590353 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
17 Hb_006002_030 0.0884748004 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
18 Hb_125092_020 0.088622378 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
19 Hb_000340_160 0.089134197 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
20 Hb_004920_060 0.0893539616 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000120_510 Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_000120_510--Hb_001396_290 Hb_001301_210 Hb_001301_210 Hb_000120_510--Hb_001301_210 Hb_006829_090 Hb_006829_090 Hb_000120_510--Hb_006829_090 Hb_000331_190 Hb_000331_190 Hb_000120_510--Hb_000331_190 Hb_000343_210 Hb_000343_210 Hb_000120_510--Hb_000343_210 Hb_000244_240 Hb_000244_240 Hb_000120_510--Hb_000244_240 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_005129_050 Hb_005129_050 Hb_001301_210--Hb_005129_050 Hb_002883_010 Hb_002883_010 Hb_001301_210--Hb_002883_010 Hb_001301_210--Hb_000244_240 Hb_000230_370 Hb_000230_370 Hb_001301_210--Hb_000230_370 Hb_001301_210--Hb_001396_290 Hb_078477_040 Hb_078477_040 Hb_006829_090--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_006829_090--Hb_006002_030 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_005462_020 Hb_005462_020 Hb_006829_090--Hb_005462_020 Hb_002652_040 Hb_002652_040 Hb_000331_190--Hb_002652_040 Hb_125092_020 Hb_125092_020 Hb_000331_190--Hb_125092_020 Hb_024990_010 Hb_024990_010 Hb_000331_190--Hb_024990_010 Hb_000035_040 Hb_000035_040 Hb_000331_190--Hb_000035_040 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000343_210--Hb_000035_040 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_002159_040 Hb_002159_040 Hb_000244_240--Hb_002159_040 Hb_007348_030 Hb_007348_030 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000244_240--Hb_000230_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.0179 37.1967 23.0643 13.8701 64.9617 82.8126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0782 16.5158 14.3448 24.4817 13.9015

CAGE analysis