Hb_005462_020

Information

Type -
Description -
Location Contig5462: 73618-75036
Sequence    

Annotation

kegg
ID mdm:103428507
description UBP1-associated protein 2A-like
nr
ID XP_012090826.1
description PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
swissprot
ID O80678
description UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1
trembl
ID A0A067JQZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03187 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ubp1-associated protein 2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47989: 72618-78708 , PASA_asmbl_47990: 72075-78708 , PASA_asmbl_47991: 73351-78708
cDNA
(Sanger)
(ID:Location)		 008_C12.ab1: 74381-78711 , 028_A16.ab1: 74350-78708 , 041_M19.ab1: 74447-78703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005462_020 0.0 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
2 Hb_078477_040 0.0569343446 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_004970_160 0.0668945068 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
4 Hb_006829_090 0.0775631551 - - PREDICTED: protein MOS2 [Jatropha curcas]
5 Hb_006002_030 0.0796211064 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
6 Hb_022250_110 0.0806390778 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
7 Hb_000120_620 0.0823524678 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
8 Hb_004899_070 0.0827233572 - - PREDICTED: RRP12-like protein [Jatropha curcas]
9 Hb_000261_290 0.0852820462 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
10 Hb_000313_340 0.0856453234 - - DNA repair protein xp-E, putative [Ricinus communis]
11 Hb_001028_070 0.086071223 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
12 Hb_001489_070 0.0862567972 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
13 Hb_000347_570 0.0881313663 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
14 Hb_000914_080 0.089415525 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_001731_020 0.0903044356 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
16 Hb_000108_080 0.0914072112 - - PREDICTED: importin-5 [Jatropha curcas]
17 Hb_001278_060 0.0915991051 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_006588_050 0.0917439038 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_000213_070 0.0919207615 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
20 Hb_000331_190 0.0922939277 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]

Gene co-expression network

sample Hb_005462_020 Hb_005462_020 Hb_078477_040 Hb_078477_040 Hb_005462_020--Hb_078477_040 Hb_004970_160 Hb_004970_160 Hb_005462_020--Hb_004970_160 Hb_006829_090 Hb_006829_090 Hb_005462_020--Hb_006829_090 Hb_006002_030 Hb_006002_030 Hb_005462_020--Hb_006002_030 Hb_022250_110 Hb_022250_110 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620 Hb_078477_040--Hb_006002_030 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_078477_040--Hb_022250_110 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_006829_090--Hb_006002_030 Hb_000120_510 Hb_000120_510 Hb_006829_090--Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_006829_090--Hb_001396_290 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_006002_030--Hb_001278_060 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_000209_070 Hb_000209_070 Hb_022250_110--Hb_000209_070 Hb_000029_320 Hb_000029_320 Hb_022250_110--Hb_000029_320 Hb_022250_110--Hb_003018_160 Hb_022250_110--Hb_006002_030 Hb_000120_620--Hb_004899_070 Hb_000098_130 Hb_000098_130 Hb_000120_620--Hb_000098_130 Hb_003097_180 Hb_003097_180 Hb_000120_620--Hb_003097_180 Hb_000261_290 Hb_000261_290 Hb_000120_620--Hb_000261_290 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
323.762 250.752 144.875 104.511 529.351 482.201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.7341 74.0314 90.6072 202.14 106.12

CAGE analysis