Hb_000213_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig213: 170402-174602
Sequence    

Annotation

kegg
ID rcu:RCOM_1215720
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID XP_012086184.1
description PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
swissprot
ID Q8GWK2
description AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 PE=2 SV=2
trembl
ID A0A067JQ27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21099 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor at2g41710 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22046: 170519-172353 , PASA_asmbl_22047: 172364-174194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_070 0.0 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
2 Hb_001278_060 0.0619151706 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_006002_030 0.0689724753 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
4 Hb_000331_190 0.0712358779 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
5 Hb_002675_060 0.0727063722 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
6 Hb_007668_020 0.0746362264 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
7 Hb_078477_040 0.0774530409 - - nuclear movement protein nudc, putative [Ricinus communis]
8 Hb_022250_110 0.079908431 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
9 Hb_005214_060 0.0826955451 - - catalytic, putative [Ricinus communis]
10 Hb_002235_320 0.0859460289 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
11 Hb_002652_040 0.0877958157 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
12 Hb_000849_100 0.0888359617 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
13 Hb_023020_060 0.0890299222 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
14 Hb_000340_160 0.0903659608 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
15 Hb_005129_050 0.0904972154 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
16 Hb_024990_010 0.0913696049 - - PREDICTED: la protein 1 [Jatropha curcas]
17 Hb_000120_510 0.0918038197 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
18 Hb_003716_020 0.091887335 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
19 Hb_005462_020 0.0919207615 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
20 Hb_000239_070 0.0921134563 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000213_070 Hb_000213_070 Hb_001278_060 Hb_001278_060 Hb_000213_070--Hb_001278_060 Hb_006002_030 Hb_006002_030 Hb_000213_070--Hb_006002_030 Hb_000331_190 Hb_000331_190 Hb_000213_070--Hb_000331_190 Hb_002675_060 Hb_002675_060 Hb_000213_070--Hb_002675_060 Hb_007668_020 Hb_007668_020 Hb_000213_070--Hb_007668_020 Hb_078477_040 Hb_078477_040 Hb_000213_070--Hb_078477_040 Hb_001278_060--Hb_006002_030 Hb_001278_060--Hb_007668_020 Hb_005129_050 Hb_005129_050 Hb_001278_060--Hb_005129_050 Hb_001433_190 Hb_001433_190 Hb_001278_060--Hb_001433_190 Hb_001278_060--Hb_078477_040 Hb_006002_030--Hb_078477_040 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_002652_040 Hb_002652_040 Hb_000331_190--Hb_002652_040 Hb_125092_020 Hb_125092_020 Hb_000331_190--Hb_125092_020 Hb_024990_010 Hb_024990_010 Hb_000331_190--Hb_024990_010 Hb_000035_040 Hb_000035_040 Hb_000331_190--Hb_000035_040 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_001221_040 Hb_001221_040 Hb_002675_060--Hb_001221_040 Hb_002675_060--Hb_000035_040 Hb_002675_060--Hb_002652_040 Hb_002942_080 Hb_002942_080 Hb_002675_060--Hb_002942_080 Hb_002675_060--Hb_000331_190 Hb_007668_020--Hb_005129_050 Hb_003581_020 Hb_003581_020 Hb_007668_020--Hb_003581_020 Hb_003716_020 Hb_003716_020 Hb_007668_020--Hb_003716_020 Hb_000199_080 Hb_000199_080 Hb_007668_020--Hb_000199_080 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_078477_040--Hb_006829_090 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9185 10.1468 6.21947 7.30885 25.0694 27.7028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.52295 4.85584 4.2463 11.4169 3.3599

CAGE analysis