Hb_001433_190

Information

Type -
Description -
Location Contig1433: 185584-192486
Sequence    

Annotation

kegg
ID rcu:RCOM_1434190
description Eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012088953.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
swissprot
ID Q9LD55
description Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1
trembl
ID A0A067JHT2
description Eukaryotic translation initiation factor 3 subunit A OS=Jatropha curcas GN=JCGZ_23260 PE=3 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3 subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11413: 185607-192281
cDNA
(Sanger)
(ID:Location)		 032_I08.ab1: 191009-191627

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_190 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
2 Hb_001278_060 0.0662971676 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_005129_050 0.0680089687 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
4 Hb_002883_010 0.068063761 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
5 Hb_007849_020 0.0805135018 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
6 Hb_001196_070 0.0808204248 - - nucleolar protein nop56, putative [Ricinus communis]
7 Hb_006002_030 0.082223969 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
8 Hb_000136_150 0.0846064078 - - hypothetical protein VITISV_038366 [Vitis vinifera]
9 Hb_002217_150 0.0864012023 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
10 Hb_000239_070 0.0865295176 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
11 Hb_000317_440 0.0867696466 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
12 Hb_005295_040 0.0878624306 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
13 Hb_002105_080 0.0894983194 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_006816_410 0.0913153549 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
15 Hb_022250_110 0.0943282493 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
16 Hb_078477_040 0.0947348824 - - nuclear movement protein nudc, putative [Ricinus communis]
17 Hb_153547_010 0.0948022328 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
18 Hb_002652_040 0.0952365115 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
19 Hb_000227_380 0.0957499534 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
20 Hb_000329_490 0.0960249178 - - hypothetical protein JCGZ_14582 [Jatropha curcas]

Gene co-expression network

sample Hb_001433_190 Hb_001433_190 Hb_001278_060 Hb_001278_060 Hb_001433_190--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_001433_190--Hb_005129_050 Hb_002883_010 Hb_002883_010 Hb_001433_190--Hb_002883_010 Hb_007849_020 Hb_007849_020 Hb_001433_190--Hb_007849_020 Hb_001196_070 Hb_001196_070 Hb_001433_190--Hb_001196_070 Hb_006002_030 Hb_006002_030 Hb_001433_190--Hb_006002_030 Hb_001278_060--Hb_006002_030 Hb_007668_020 Hb_007668_020 Hb_001278_060--Hb_007668_020 Hb_000213_070 Hb_000213_070 Hb_001278_060--Hb_000213_070 Hb_001278_060--Hb_005129_050 Hb_078477_040 Hb_078477_040 Hb_001278_060--Hb_078477_040 Hb_001301_210 Hb_001301_210 Hb_005129_050--Hb_001301_210 Hb_005129_050--Hb_002883_010 Hb_005129_050--Hb_007668_020 Hb_005129_050--Hb_001196_070 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_001196_070--Hb_001278_060 Hb_125092_020 Hb_125092_020 Hb_001196_070--Hb_125092_020 Hb_000120_510 Hb_000120_510 Hb_001196_070--Hb_000120_510 Hb_001196_070--Hb_001301_210 Hb_006002_030--Hb_078477_040 Hb_006829_090 Hb_006829_090 Hb_006002_030--Hb_006829_090 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.7071 38.4784 16.9377 14.3469 112.596 124.704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6061 17.9082 28.5545 51.0248 23.8689

CAGE analysis